RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IL18RAPO95256 599 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TNNI1P19237 187 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SAMD3Q8N6K7 520 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TBC1D15Q8TC07 691 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TESK2Q96S53 571 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 UGT2B28Q9BY64 529 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PLCL2Q9UPR0 1127 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SMCHD1A6NHR9 2005 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PLEKHG1Q9ULL1 1385 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 A0A1W2PQJ5 194 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PSMD11O00231 422 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NR2F2P24468 414 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 KIF22Q14807 665 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 C12orf60Q5U649 245 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TRAPPC11Q7Z392 1133 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 EPS8L1Q8TE68 723 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 DPH5Q9H2P9 285 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TRABDQ9H4I3 376 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MLXIPLQ9NP71 852 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SLC8A2Q9UPR5 921 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 AURKCQ9UQB9 309 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CDC42BPGQ6DT37 1551 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MROH5Q6ZUA9 1318 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 LRRIQ4A6NIV6 560 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 EPN2O95208 641 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SLC9C2Q5TAH2 1124 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ERICH5Q6P6B1 374 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 IYDQ6PHW0 289 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 LRRC6Q86X45 466 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NME9Q86XW9 330 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GJD3Q8N144 294 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NOA1Q8NC60 698 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 KIF1AQ12756 1690 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NFE2L1Q14494 772 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GPATCH4Q5T3I0 446 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PYHIN1Q6K0P9 492 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 C17orf53Q8N3J3 647 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TAS2R1Q9NYW7 299 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PIPSLA2A3N6 862 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 WDR64B1ANS9 1081 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ATP4AP20648 1035 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 FLT3P36888 993 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NDUFA8P51970 172 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GPC5P78333 572 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 YWHAHQ04917 246 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TTC39BQ5VTQ0 682 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SNX30Q5VWJ9 437 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ALKBH5Q6P6C2 394 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NET1Q7Z628 596 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TAF8Q7Z7C8 310 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 KYQ8NBH2 561 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PJA1Q8NG27 643 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ADPGKQ9BRR6 497 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ILKAPQ9H0C8 392 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MED11Q9P086 117 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CNOT7Q9UIV1 285 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 VPS4AQ9UN37 437 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SRPRBQ9Y5M8 271 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NBASA2RRP1 2371 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 NPTXRO95502 500 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 IDO1P14902 403 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 AKR1D1P51857 326 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GJA9P57773 515 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ILF3Q12906 894 aaKnown RBP eCLIP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 LPIN1Q14693 890 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PARP6Q2NL67 630 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SLC45A4Q5BKX6 768 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 DNAJB7Q7Z6W7 309 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PRPF39Q86UA1 669 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 OR8H2Q8N162 312 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TRPV1Q8NER1 839 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 AFG1LQ8WV93 481 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 FBXO9Q9UK97 447 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TDRKHQ9Y2W6 561 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ANKRD36CQ5JPF3 1778 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 KIAA0391O15091 583 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 IST1P53990 364 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MYL7Q01449 175 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CAMK1Q14012 370 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MAPRE1Q15691 268 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CYP51A1Q16850 503 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 FAM26FQ5R3K3 315 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 BROXQ5VW32 411 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ANKRD13DQ6ZTN6 518 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC185Q8N715 623 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 FAR1Q8WVX9 515 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PRMT1Q99873 361 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ACAT2Q9BWD1 397 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SYNDIG1Q9H7V2 258 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 C2CD2Q9Y426 696 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 OR14I1A6ND48 311 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ATP6V1G2O95670 118 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TTLL1O95922 423 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CDK7P50613 346 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CCR3P51677 355 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 HAND2P61296 217 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 IFRD2Q12894 506 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GALNT3Q14435 633 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 EMC2Q15006 297 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms