RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C22orf31O95567 290 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 CYP2C8P10632 490 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 P3H1Q32P28 736 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 WDR72Q3MJ13 1102 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 SPOCD1Q6ZMY3 1216 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 MICALCLQ6ZW33 695 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 EXOC3L1Q86VI1 746 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 SPATS2Q86XZ4 545 aaKnown RBP21.21■□□□□ 0.99
VPS53-201ENST00000291074 CCDC89Q8N998 374 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 RBM41Q96IZ5 413 aaKnown RBP21.21■□□□□ 0.99
VPS53-201ENST00000291074 SEC16BQ96JE7 1060 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 RPF1Q9H9Y2 349 aaKnown RBP21.21■□□□□ 0.99
VPS53-201ENST00000291074 PCDHGC3Q9UN70 934 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 MFSD5Q6N075 450 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 C6orf89Q6UWU4 347 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 EXOC8Q8IYI6 725 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 C1orf127Q8N9H9 656 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 C9orf72Q96LT7 481 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 TWNKQ96RR1 684 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 JPH2Q9BR39 696 aaPredicted RBP21.21■□□□□ 0.99
VPS53-201ENST00000291074 SMYD3Q9H7B4 428 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 IFT122Q9HBG6 1241 aa21.21■□□□□ 0.99
VPS53-201ENST00000291074 ATXN2Q99700 1313 aaKnown RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 LRRD1A4D1F6 860 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 EIF4BP23588 611 aaKnown RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 CDH5P33151 784 aaPredicted RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 RFC1P35251 1148 aaPredicted RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 IFNAR2P48551 515 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 TTLL4Q14679 1199 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CPLX4Q7Z7G2 160 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CROCCP2Q86T23 111 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 JOSD2Q8TAC2 188 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CENPTQ96BT3 561 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CHMP6Q96FZ7 201 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CPB2Q96IY4 423 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 INTS9Q9NV88 658 aaKnown RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 C5orf60A6NFR6 353 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 INSRRP14616 1297 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 C3orf20Q8ND61 904 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 PRMT1Q99873 361 aaKnown RBP21.2■□□□□ 0.98
VPS53-201ENST00000291074 ZNF518BQ9C0D4 1074 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 ZNF148Q9UQR1 794 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 TNFSF13BQ9Y275 285 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 CEP83Q9Y592 693 aa21.2■□□□□ 0.98
VPS53-201ENST00000291074 A0A087WZ62 844 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 LACTBL1A8MY62 500 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ITGB3P05106 788 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 OSBPP22059 807 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 GJA5P36382 358 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 CETN2P41208 172 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 CAV1Q03135 178 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 SMTNL2Q2TAL5 461 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 JADE1Q6IE81 842 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ARMCX2Q7L311 632 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ZNF317Q96PQ6 595 aaPredicted RBP21.19■□□□□ 0.98
VPS53-201ENST00000291074 FDXACB1Q9BRP7 624 aaPredicted RBP21.19■□□□□ 0.98
VPS53-201ENST00000291074 ROPN1BQ9BZX4 212 aaPredicted RBP21.19■□□□□ 0.98
VPS53-201ENST00000291074 ROPN1Q9HAT0 212 aaPredicted RBP21.19■□□□□ 0.98
VPS53-201ENST00000291074 SLC26A2P50443 739 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 RAD23BP54727 409 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ARHGAP1Q07960 439 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ZNF667Q5HYK9 610 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 ERAP1Q9NZ08 941 aa21.19■□□□□ 0.98
VPS53-201ENST00000291074 PLXNA1Q9UIW2 1896 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 hCG_1818297A0A087WSY0 165 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 TJP3O95049 919 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 STAG3L1P0CL83 205 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 CETPP11597 493 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 EMC1Q8N766 993 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 ARHGEF2Q92974 986 aaKnown RBP21.18■□□□□ 0.98
VPS53-201ENST00000291074 STMN4Q9H169 189 aaPredicted RBP21.18■□□□□ 0.98
VPS53-201ENST00000291074 MROH8Q9H579 483 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 ZWILCHQ9H900 591 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 VTNP04004 478 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 ZNF286BP0CG31 522 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 PSMA2P25787 234 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 PIGHQ14442 188 aaPredicted RBP21.18■□□□□ 0.98
VPS53-201ENST00000291074 KCNT1Q5JUK3 1230 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 HIBCHQ6NVY1 386 aaPredicted RBP21.18■□□□□ 0.98
VPS53-201ENST00000291074 ARFGAP1Q8N6T3 406 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 MGARPQ8TDB4 240 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 KAT2BQ92831 832 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 CPXM1Q96SM3 734 aa21.18■□□□□ 0.98
VPS53-201ENST00000291074 SAE1Q9UBE0 346 aaPredicted RBP21.18■□□□□ 0.98
VPS53-201ENST00000291074 LGALS2P05162 132 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 CDKN2BP42772 138 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 LRRC14Q15048 493 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 SPRED3Q2MJR0 410 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 LRRC38Q5VT99 294 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 KIAA0319LQ8IZA0 1049 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 CACNA2D3Q8IZS8 1091 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 SERPINB12Q96P63 405 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 BCO2Q9BYV7 579 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 TBK1Q9UHD2 729 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 ZSWIM8A7E2V4 1837 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 ARSEP51690 589 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 DYNLT1P63172 113 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 CNGA2Q16280 664 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 AMHR2Q16671 573 aa21.17■□□□□ 0.98
VPS53-201ENST00000291074 TTC31Q49AM3 519 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms