RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 TRIM71Q2Q1W2 868 aaKnown RBP16.32■□□□□ 0.2
COPS3-201ENST00000268717 RASIP1Q5U651 963 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 TMEM35BQ8NCS4 154 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 ACTRT1Q8TDG2 376 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 ZNF560Q96MR9 790 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 SELENOOQ9BVL4 669 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 SMYD3Q9H7B4 428 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 MRPL47Q9HD33 250 aaKnown RBP16.32■□□□□ 0.2
COPS3-201ENST00000268717 TTC7AQ9ULT0 858 aaPredicted RBP16.32■□□□□ 0.2
COPS3-201ENST00000268717 HES2Q9Y543 173 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 SCINQ9Y6U3 715 aa16.32■□□□□ 0.2
COPS3-201ENST00000268717 CALCAP01258 141 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 CALB1P05937 261 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 H2AFXP16104 143 aaPredicted RBP16.31■□□□□ 0.2
COPS3-201ENST00000268717 MMP8P22894 467 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 RAB27AP51159 221 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 RAD23BP54727 409 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 RASGEF1CQ8N431 466 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 MMGT1Q8N4V1 131 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 WHAMMQ8TF30 809 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 CPA5Q8WXQ8 436 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 RUBCNQ92622 972 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 TMEM176AQ96HP8 235 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 SDCBP2Q9H190 292 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 CARD9Q9H257 536 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 CXCL16Q9H2A7 254 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 ERVK-5Q9HDB9 667 aa16.31■□□□□ 0.2
COPS3-201ENST00000268717 PIRO00625 290 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 KCNK3O14649 394 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 FGBP02675 491 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 PFKMP08237 780 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 CKBP12277 381 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 SELPP16109 830 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 AKAP5P24588 427 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 LRPAP1P30533 357 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 THPOP40225 353 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 GUCY2FP51841 1108 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 PTP4A2Q12974 167 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 STILQ15468 1287 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 FBXO47Q5MNV8 452 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 C9orf57Q5W0N0 161 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 PLEKHA7Q6IQ23 1121 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 FAM43BQ6ZT52 329 aaPredicted RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 DEFB128Q7Z7B8 93 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 SLC4A11Q8NBS3 891 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 SPATA4Q8NEY3 305 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 HERVK_113Q902F9 699 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 FAM105AQ9NUU6 356 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 ARGLU1Q9NWB6 273 aaPredicted RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 ADAM22Q9P0K1 906 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 TUBGCP4Q9UGJ1 667 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 PARP2Q9UGN5 583 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 ALG6Q9Y672 507 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 CDH23Q9H251 3354 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 TARSL2A2RTX5 802 aaKnown RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 DDX3YO15523 660 aaKnown RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 ZNF623O75123 536 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 CTSHP09668 335 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 FAM163BP0C2L3 166 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 VDRP11473 427 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 ZSCAN20P17040 1043 aaPredicted RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 BRD2P25440 801 aaKnown RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 CXCR5P32302 372 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 GSCP56915 257 aaPredicted RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 LRRC8DQ7L1W4 858 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 MRPL10Q7Z7H8 261 aaKnown RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 UNC93AQ86WB7 457 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 UBL4BQ8N7F7 174 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 NOA1Q8NC60 698 aaKnown RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 ZSWIM1Q9BR11 485 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 RNF39Q9H2S5 420 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 GOLPH3Q9H4A6 298 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 SLC38A7Q9NVC3 462 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 GDAP2Q9NXN4 497 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 RAB21Q9UL25 225 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 PACSIN2Q9UNF0 486 aaPredicted RBP16.3■□□□□ 0.2
COPS3-201ENST00000268717 GIT1Q9Y2X7 761 aa16.3■□□□□ 0.2
COPS3-201ENST00000268717 GBF1Q92538 1859 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 ATMINO43313 823 aaPredicted RBP16.29■□□□□ 0.2
COPS3-201ENST00000268717 CFHP08603 1231 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 RRM1P23921 792 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 CTNNA2P26232 953 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 SLC1A1P43005 524 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 RAP1GAPP47736 663 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 SMAD3P84022 425 aaKnown RBP16.29■□□□□ 0.2
COPS3-201ENST00000268717 PAK2Q13177 524 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 CNGA2Q16280 664 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 ZNF394Q53GI3 561 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 CCDC70Q6NSX1 233 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 OTOP2Q7RTS6 562 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 LIMS2Q7Z4I7 341 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 TFAP2BQ92481 460 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 CD101Q93033 1021 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 C18orf25Q96B23 403 aaPredicted RBP16.29■□□□□ 0.2
COPS3-201ENST00000268717 PPP1R10Q96QC0 940 aaKnown RBP16.29■□□□□ 0.2
COPS3-201ENST00000268717 PSMB7Q99436 277 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 APOL6Q9BWW8 343 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 NT5C1AQ9BXI3 368 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 ELOVL4Q9GZR5 314 aa16.29■□□□□ 0.2
COPS3-201ENST00000268717 DNAI2Q9GZS0 605 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms