RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 DDHD1Q8NEL9 900 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 RNF25Q96BH1 459 aaPredicted RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 ALKBH8Q96BT7 664 aaKnown RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 ARHGEF26Q96DR7 871 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 AGBL1Q96MI9 1066 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 EMILIN2Q9BXX0 1053 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 NOD2Q9HC29 1040 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 DLGAP2Q9P1A6 1054 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 L3MBTL1Q9Y468 752 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 SLC30A1Q9Y6M5 507 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 ATP1A3P13637 1013 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 GPD1P21695 349 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 THPOP40225 353 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 GFPT1Q06210 699 aaPredicted RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 CXCL9Q07325 125 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 BOLA3Q53S33 107 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 ZNF280DQ6N043 979 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TRIM59Q8IWR1 403 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TMC2Q8TDI7 906 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 HPDLQ96IR7 371 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 NDFIP2Q9NV92 336 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 RRN3Q9NYV6 651 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TUBE1Q9UJT0 475 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TBKBP1A7MCY6 615 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PRR29P0C7W0 189 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 ARL4DP49703 201 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PMS2P54278 862 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 THAP11Q96EK4 314 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TMEM165Q9HC07 324 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 NRBP1Q9UHY1 535 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PCDHGB4Q9UN71 923 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 CAPN1P07384 714 aa13.33□□□□□ -0.27
USP40-201ENST00000251722 GEMIN4P57678 1058 aaKnown RBP13.33□□□□□ -0.27
USP40-201ENST00000251722 ANO5Q75V66 913 aa13.33□□□□□ -0.27
USP40-201ENST00000251722 PRMT6Q96LA8 375 aaPredicted RBP13.33□□□□□ -0.27
USP40-201ENST00000251722 A0A1B0GW55 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L2P0CJ85 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L3P0CJ86 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L4P0CJ87 422 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L5P0CJ88 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L6P0CJ89 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4L7P0CJ90 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 HDAC4P56524 1084 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 GPS1Q13098 491 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 PPIL2Q13356 520 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 WDR60Q8WVS4 1066 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 PPWD1Q96BP3 646 aaKnown RBP13.33□□□□□ -0.28
USP40-201ENST00000251722 MUC3BQ9H195 1237 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DUX4Q9UBX2 424 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 R3HDM2Q9Y2K5 976 aaKnown RBP13.33□□□□□ -0.28
USP40-201ENST00000251722 CYP26A1O43174 497 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 LCA5LO95447 670 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 ANP32DO95626 131 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 ESRRAP11474 423 aaPredicted RBP13.33□□□□□ -0.28
USP40-201ENST00000251722 AP2B1P63010 937 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 SLC12A1Q13621 1099 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DAB2IPQ5VWQ8 1189 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 ZNF410Q86VK4 478 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 GORASP1Q9BQQ3 440 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DPP3Q9NY33 737 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 TMEM253P0C7T8 217 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 VDRP11473 427 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 UGT3A1Q6NUS8 523 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 ANLNQ9NQW6 1124 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 DOLKQ9UPQ8 538 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 CXCR5P32302 372 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 GGCXP38435 758 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 PAWRQ96IZ0 340 aaKnown RBP13.33□□□□□ -0.28
USP40-201ENST00000251722 FAM192AQ9GZU8 254 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 SPATC1LQ9H0A9 340 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 NOVA2Q9UNW9 492 aaKnown RBP13.33□□□□□ -0.28
USP40-201ENST00000251722 WDR37Q9Y2I8 494 aa13.33□□□□□ -0.28
USP40-201ENST00000251722 A0A1B0GTH6 734 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 RNASEH1O60930 286 aaKnown RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 ANXA9O76027 345 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 NLRP11P59045 1033 aaKnown RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 PTK6Q13882 451 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 TIGD7Q6NT04 549 aaPredicted RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 HERC6Q8IVU3 1022 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 OR6P1Q8NGX9 317 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 ABHD16BQ9H3Z7 469 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 PXMP2Q9NR77 195 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 PPLO60437 1756 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 PP2D1A8MPX8 630 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 RASA4BC9J798 803 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 RASA4O43374 803 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 AMHP03971 560 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 SF3A3Q12874 501 aaKnown RBP eCLIP13.32□□□□□ -0.285e-6■■■■■ 39.5
USP40-201ENST00000251722 AARS2Q5JTZ9 985 aaKnown RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 EPM2AIP1Q7L775 607 aaPredicted RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 GLYCTKQ8IVS8 523 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 CYTH2Q99418 400 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 ITIH2P19823 946 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 NCF2P19878 526 aaPredicted RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 EPHB3P54753 998 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 NAPEPLDQ6IQ20 393 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 CCDC137Q6PK04 289 aaKnown RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 HORMAD1Q86X24 394 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 CCNJLQ8IV13 435 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 HEMGNQ9BXL5 484 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms