RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	YAP1802	P53309	568 aa		11.38	□□□□□ -0.59
DEP1	YAL013W	YMR253C	Q04835	414 aa		11.38	□□□□□ -0.59
DEP1	YAL013W	PCC1	Q3E833	88 aa		11.38	□□□□□ -0.59
DEP1	YAL013W	PHO85	P17157	305 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YAR068W	P39564	161 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YFL054C	P43549	646 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	PAU4	P53427	120 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YMR007W	Q03675	126 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YMR166C	Q03829	368 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YHP1	Q04116	353 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	RKI1	Q12189	258 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	JID1	Q12350	301 aa		11.37	□□□□□ -0.59
DEP1	YAL013W	YER145C-A	A0A023PYF4	145 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-DR4	O74302	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-A	P0CX57	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-PR1	P0CX58	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-OR	P0CX59	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-PR2	P0CX60	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-DR5	P0CX65	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-ER2	P0CX66	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-GR3	P0CX67	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-LR1	P0CX68	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-MR2	P0CX69	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	RPL14A	P36105	138 aa	Known RBP	11.36	□□□□□ -0.59
DEP1	YAL013W	RIB5	P38145	238 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	RPL14B	P38754	138 aa	Known RBP	11.36	□□□□□ -0.59
DEP1	YAL013W	POG1	P40473	351 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-JR2	P47099	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-DR1	Q03856	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-ML1	Q04706	440 aa	Known RBP	11.36	□□□□□ -0.59
DEP1	YAL013W	CTR3	Q06686	241 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-BR	Q12217	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-NL2	Q12470	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	TY1A-GR2	Q12485	440 aa		11.36	□□□□□ -0.59
DEP1	YAL013W	RAD23	P32628	398 aa	Known RBP	11.35	□□□□□ -0.59
DEP1	YAL013W	CSH1	P38287	376 aa		11.35	□□□□□ -0.59
DEP1	YAL013W	PIC2	P40035	300 aa		11.35	□□□□□ -0.59
DEP1	YAL013W	MIC27	P50945	234 aa		11.35	□□□□□ -0.59
DEP1	YAL013W	POS5	Q06892	414 aa		11.35	□□□□□ -0.59
DEP1	YAL013W	PIS1	P06197	220 aa	Known RBP	11.34	□□□□□ -0.59
DEP1	YAL013W	SUA7	P29055	345 aa	Predicted RBP	11.34	□□□□□ -0.59
DEP1	YAL013W	YPT31	P38555	223 aa	Known RBP	11.34	□□□□□ -0.59
DEP1	YAL013W	BDH1	P39714	382 aa		11.34	□□□□□ -0.59
DEP1	YAL013W	YGR018C	P53211	109 aa		11.34	□□□□□ -0.59
DEP1	YAL013W	SNO1	Q03144	224 aa		11.34	□□□□□ -0.59
DEP1	YAL013W	SHH3	Q04487	196 aa		11.34	□□□□□ -0.59
DEP1	YAL013W	NDE2	Q07500	545 aa		11.34	□□□□□ -0.59
DEP1	YAL013W	ILV5	P06168	395 aa	Known RBP	11.33	□□□□□ -0.6
DEP1	YAL013W	ACP1	P32463	125 aa		11.33	□□□□□ -0.6
DEP1	YAL013W	ALK2	P32789	676 aa	Predicted RBP	11.33	□□□□□ -0.6
DEP1	YAL013W	PRE3	P38624	215 aa		11.33	□□□□□ -0.6
DEP1	YAL013W	YML108W	Q03759	105 aa		11.33	□□□□□ -0.6
DEP1	YAL013W	YMR316C-A	I2HB70	103 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU1	P0CE88	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU14	P0CE89	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU6	P0CE90	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU18	P0CE91	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU8	P0CE92	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU11	P0CE93	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	YCR022C	P25620	114 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	YBL071C	P38185	102 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU13	P38725	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	WWM1	P43582	211 aa	Known RBP	11.32	□□□□□ -0.6
DEP1	YAL013W	TAX4	P47030	604 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU10	Q03050	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	PAU20	Q08322	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	ERV2	Q12284	196 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	SME1	Q12330	94 aa	Predicted RBP	11.32	□□□□□ -0.6
DEP1	YAL013W	PAU9	Q3E770	120 aa		11.32	□□□□□ -0.6
DEP1	YAL013W	DER1	P38307	211 aa		11.31	□□□□□ -0.6
DEP1	YAL013W	GPP2	P40106	250 aa	Known RBP	11.31	□□□□□ -0.6
DEP1	YAL013W	SAS2	P40963	338 aa		11.31	□□□□□ -0.6
DEP1	YAL013W	TIM11	P81449	96 aa	Predicted RBP	11.31	□□□□□ -0.6
DEP1	YAL013W	RPL15A	P05748	204 aa	Known RBP	11.3	□□□□□ -0.6
DEP1	YAL013W	MRP2	P10663	115 aa	Predicted RBP	11.3	□□□□□ -0.6
DEP1	YAL013W	RPB9	P27999	122 aa		11.3	□□□□□ -0.6
DEP1	YAL013W	PHS1	P40857	217 aa		11.3	□□□□□ -0.6
DEP1	YAL013W	LOC1	P43586	204 aa	Predicted RBP	11.3	□□□□□ -0.6
DEP1	YAL013W	RPL15B	P54780	204 aa	Predicted RBP	11.3	□□□□□ -0.6
DEP1	YAL013W	PAA1	Q12447	191 aa	Known RBP	11.3	□□□□□ -0.6
DEP1	YAL013W	LST7	P53237	242 aa		11.29	□□□□□ -0.6
DEP1	YAL013W	YCL042W	P25572	119 aa		11.28	□□□□□ -0.6
DEP1	YAL013W	HHO1	P53551	258 aa		11.28	□□□□□ -0.6
DEP1	YAL013W	ATC1	Q04005	294 aa		11.28	□□□□□ -0.6
DEP1	YAL013W	YOR352W	Q08816	343 aa		11.28	□□□□□ -0.6
DEP1	YAL013W	DOG2	P38773	246 aa		11.27	□□□□□ -0.61
DEP1	YAL013W	DOG1	P38774	246 aa		11.27	□□□□□ -0.61
DEP1	YAL013W	PTC7	P38797	343 aa		11.27	□□□□□ -0.61
DEP1	YAL013W	BNS1	P50084	137 aa		11.27	□□□□□ -0.61
DEP1	YAL013W	TY1A-LR4	P0C2I8	440 aa	Known RBP	11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-DR6	P0CX70	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-ER1	P0CX71	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-LR2	P0CX72	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-PL	P0CX73	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-JR1	P0CX74	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-LR3	P0CX75	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	TY1A-ML2	P0CX76	440 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	SEC59	P20048	519 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	RTS2	P40962	232 aa		11.26	□□□□□ -0.61
DEP1	YAL013W	YPL108W	Q02872	168 aa	Predicted RBP	11.26	□□□□□ -0.61

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