RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RHOP08100 348 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 PDCP20941 246 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 NXPH1P58417 271 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 TCF15Q12870 199 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 PREPLQ4J6C6 727 aaPredicted RBP5.5□□□□□ -1.53
CD44-239ENST00000639002 TSTD2Q5T7W7 516 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 TAF2Q6P1X5 1199 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 AOPEPQ8N6M6 819 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 C3orf20Q8ND61 904 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 DPF1Q92782 380 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 RFKQ969G6 155 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 KLC4Q9NSK0 619 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 RLIMQ9NVW2 624 aa5.5□□□□□ -1.53
CD44-239ENST00000639002 A0A0B4J269 797 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 F5H697 171 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 RPLP2P05387 115 aaKnown RBP5.49□□□□□ -1.53
CD44-239ENST00000639002 TUBB3Q13509 450 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 BOP1Q14137 746 aaKnown RBP5.49□□□□□ -1.53
CD44-239ENST00000639002 KIF22Q14807 665 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 B3GALNT2Q8NCR0 500 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 PSD4Q8NDX1 1056 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 MAN1C1Q9NR34 630 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 DKK3Q9UBP4 350 aa5.49□□□□□ -1.53
CD44-239ENST00000639002 KIF20AO95235 890 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 PIK3CGP48736 1102 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 NDUFV1P49821 464 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 ZNF135P52742 658 aaPredicted RBP5.48□□□□□ -1.53
CD44-239ENST00000639002 HK3P52790 923 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 ITIH3Q06033 890 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 NOGQ13253 232 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 PPP1R32Q7Z5V6 425 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 AMIGO2Q86SJ2 522 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 MIER2Q8N344 545 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 FAM109AQ8N4B1 249 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 OSBPL9Q96SU4 736 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 SMAD5Q99717 465 aaKnown RBP5.48□□□□□ -1.53
CD44-239ENST00000639002 MRPL46Q9H2W6 279 aaKnown RBP5.48□□□□□ -1.53
CD44-239ENST00000639002 PCDH12Q9NPG4 1184 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 SLAMF7Q9NQ25 335 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 CFAP97Q9P2B7 532 aa5.48□□□□□ -1.53
CD44-239ENST00000639002 VPS4BO75351 444 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 POU2F2P09086 479 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 FTH1P19P0C7X4 201 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 RARBP10826 455 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 CHRM3P20309 590 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 GPD1P21695 349 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 CCND1P24385 295 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 SMARCA1P28370 1054 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 PCSK6P29122 969 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 HEATR3Q7Z4Q2 680 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 PPP1R3BQ86XI6 285 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 RASAL3Q86YV0 1011 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 POLHQ9Y253 713 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 SPEF1Q9Y4P9 236 aa5.47□□□□□ -1.53
CD44-239ENST00000639002 DNAJC9-AS1A6NH13 148 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 CHEK2O96017 543 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 GNAI3P08754 354 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 NR2F6P10588 404 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 RECQLP46063 649 aaPredicted RBP5.46□□□□□ -1.54
CD44-239ENST00000639002 MAP2K6P52564 334 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 SOX10P56693 466 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 KRTAP10-11P60412 298 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 GNAI1P63096 354 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 TFF2Q03403 129 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 VPS53Q5VIR6 699 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 PAPD7Q5XG87 772 aaKnown RBP5.46□□□□□ -1.54
CD44-239ENST00000639002 USP45Q70EL2 814 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 USP37Q86T82 979 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 PBKQ96KB5 322 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 HAPLN3Q96S86 360 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 CNPPD1Q9BV87 410 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 TINAGL1Q9GZM7 467 aaPredicted RBP5.46□□□□□ -1.54
CD44-239ENST00000639002 SERHLQ9NQF3 203 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 GNL3LQ9NVN8 582 aaKnown RBP5.46□□□□□ -1.54
CD44-239ENST00000639002 ABCF2Q9UG63 623 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.46□□□□□ -1.54
CD44-239ENST00000639002 COL4A3BPQ9Y5P4 624 aa5.46□□□□□ -1.54
CD44-239ENST00000639002 MANSC4A6NHS7 340 aaPredicted RBP5.45□□□□□ -1.54
CD44-239ENST00000639002 SLC16A6O15403 523 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 TRIAP1O43715 76 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 ORC4O43929 436 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 AHSGP02765 367 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 CDK4P11802 303 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 JUPP14923 745 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 SRSF4Q08170 494 aaKnown RBP5.45□□□□□ -1.54
CD44-239ENST00000639002 BRDTQ58F21 947 aaPredicted RBP5.45□□□□□ -1.54
CD44-239ENST00000639002 TMEM240Q5SV17 173 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 RBM20Q5T481 1227 aaKnown RBP5.45□□□□□ -1.54
CD44-239ENST00000639002 CATIPQ7Z7H3 387 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 GLCCI1Q86VQ1 547 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 CPA6Q8N4T0 437 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 DDB2Q92466 427 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 TNPO1Q92973 898 aaKnown RBP5.45□□□□□ -1.54
CD44-239ENST00000639002 RGMAQ96B86 450 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 ACTRT3Q9BYD9 372 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 TPSD1Q9BZJ3 242 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 WDCPQ9H6R7 721 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 KMT5AQ9NQR1 393 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 SERTAD4Q9NUC0 356 aa5.45□□□□□ -1.54
CD44-239ENST00000639002 ZDHHC8Q9ULC8 765 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms