RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CWF19L1Q69YN2 538 aaKnown RBP11.6□□□□□ -0.55
CLN3-244ENST00000636147 FAM71DQ8N9W8 422 aa11.6□□□□□ -0.55
CLN3-244ENST00000636147 LRRC19Q9H756 370 aa11.6□□□□□ -0.55
CLN3-244ENST00000636147 KCNMB3Q9NPA1 279 aa11.6□□□□□ -0.55
CLN3-244ENST00000636147 IP6K2Q9UHH9 426 aa11.6□□□□□ -0.55
CLN3-244ENST00000636147 PCDHB2Q9Y5E7 798 aa11.6□□□□□ -0.55
CLN3-244ENST00000636147 PIK3R2O00459 728 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 CASQ2O14958 399 aaPredicted RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 USP1O94782 785 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 WEE2P0C1S8 567 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 AQP5P55064 265 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 JAM2P57087 298 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ZNF200P98182 395 aaPredicted RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 SLC45A4Q5BKX6 768 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ARHGEF16Q5VV41 709 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 C1orf228Q6PIY5 440 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 PCGF5Q86SE9 256 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 TRABD2AQ86V40 505 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 RFWD2Q8NHY2 731 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 PYDC1Q8WXC3 89 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 CLIC5Q9NZA1 410 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 SEPT10Q9P0V9 454 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 PRR12Q9ULL5 1215 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 FAM237BA0A1B0GVD1 139 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ADCY3O60266 1144 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 APRTP07741 180 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 LINGO3P0C6S8 592 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 EIF3EP60228 445 aaKnown RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 PTK6Q13882 451 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 PDK4Q16654 411 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 PARP6Q2NL67 630 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 FAM182AQ5T1J6 154 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 MROH9Q5TGP6 573 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 IYDQ6PHW0 289 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 CLNKQ7Z7G1 428 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 MAP7D3Q8IWC1 876 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ATXN7L3BQ96GX2 97 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 UNC45AQ9H3U1 944 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 NGRNQ9NPE2 291 aaKnown RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 RAB6BQ9NRW1 208 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ZBED1O96006 694 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 SKIV2L2P42285 1042 aaKnown RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 CRKP46108 304 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 GCLCP48506 637 aaPredicted RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 GRIK3Q13003 919 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 ALCAMQ13740 583 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 MFSD7Q6UXD7 560 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 SV2AQ7L0J3 742 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 DEPDC1BQ8WUY9 529 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 E2F7Q96AV8 911 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 OPTNQ96CV9 577 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 CLPTM1LQ96KA5 538 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 SENP7Q9BQF6 1050 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 FERMT1Q9BQL6 677 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 DDX4Q9NQI0 724 aaKnown RBP11.59□□□□□ -0.55
CLN3-244ENST00000636147 PARVAQ9NVD7 372 aa11.59□□□□□ -0.55
CLN3-244ENST00000636147 BAZ2AQ9UIF9 1905 aaKnown RBP11.58□□□□□ -0.55
CLN3-244ENST00000636147 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 E7ENQ6 273 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 RPS6KA4O75676 772 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 KRT38O76015 456 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 PDE5AO76074 875 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 PGM3O95394 542 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 TMEM191BP0C7N4 346 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 RBP3P10745 1247 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 SOX10P56693 466 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 BMPR2Q13873 1038 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 CNGA3Q16281 694 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 SEZ6Q53EL9 994 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 CYP4A22Q5TCH4 519 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 KRT80Q6KB66 452 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 CDC42EP5Q6NZY7 148 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 C4orf50Q6ZRC1 276 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 RCOR2Q8IZ40 523 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 NDUFAF2Q8N183 169 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 TMEM35BQ8NCS4 154 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 ETNPPLQ8TBG4 499 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 ZNF668Q96K58 619 aaPredicted RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 VPS11Q9H270 941 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 WASF2Q9Y6W5 498 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 PROSCO94903 275 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 YWHABP31946 246 aaKnown RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 FMO1Q01740 532 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 STX3Q13277 289 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 MTMR1Q13613 665 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 SHROOM1Q2M3G4 852 aaPredicted RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 ANO5Q75V66 913 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 EFCAB3Q8N7B9 438 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 ASAP3Q8TDY4 903 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 NUF2Q9BZD4 464 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 KCNQ5Q9NR82 932 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 PACSIN3Q9UKS6 424 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 TTLL3Q9Y4R7 772 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 SREBF1P36956 1147 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 YARSP54577 528 aaKnown RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 ZCCHC23Q6ZST2 131 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 MCOLN2Q8IZK6 566 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 ZSWIM2Q8NEG5 633 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 ALKBH8Q96BT7 664 aaKnown RBP11.58□□□□□ -0.56
CLN3-244ENST00000636147 TMEM109Q9BVC6 243 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms