RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TCEAL8Q8IYN2 117 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 GJD3Q8N144 294 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 PDCL2Q8N4E4 241 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 TOP6BLQ8N6T0 577 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 SYAP1Q96A49 352 aaPredicted RBP22.25■■□□□ 1.15
CLN3-240ENST00000631023 EEF2KMTQ96G04 330 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 NUP62CLQ9H1M0 184 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 POMKQ9H5K3 350 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 CYP4F11Q9HBI6 524 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 CDH22Q9UJ99 828 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 PPP1R3GB7ZBB8 358 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 C4BPAP04003 597 aaKnown RBP22.24■■□□□ 1.15
CLN3-240ENST00000631023 CD44P16070 742 aaKnown RBP22.24■■□□□ 1.15
CLN3-240ENST00000631023 PMS1P54277 932 aaKnown RBP22.24■■□□□ 1.15
CLN3-240ENST00000631023 ADCY1Q08828 1119 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 GPR17Q13304 367 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 TDRD10Q5VZ19 366 aaKnown RBP22.24■■□□□ 1.15
CLN3-240ENST00000631023 FOXR2Q6PJQ5 311 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 NELFBQ8WX92 580 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 L1RE1Q9UN81 338 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 NR2E1Q9Y466 385 aa22.24■■□□□ 1.15
CLN3-240ENST00000631023 TRIM49BA6NDI0 452 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 STAU1O95793 577 aaKnown RBP22.23■■□□□ 1.15
CLN3-240ENST00000631023 LHX1P48742 406 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 MYL7Q01449 175 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 WDR72Q3MJ13 1102 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 ZACNQ401N2 412 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 RNF19BQ6ZMZ0 732 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 ZC3H3Q8IXZ2 948 aaKnown RBP22.23■■□□□ 1.15
CLN3-240ENST00000631023 ZNF707Q96C28 371 aaPredicted RBP22.23■■□□□ 1.15
CLN3-240ENST00000631023 RPGRIP1Q96KN7 1286 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 MMS19Q96T76 1030 aa22.23■■□□□ 1.15
CLN3-240ENST00000631023 C19orf67A6NJJ6 358 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 SLC16A3O15427 465 aaKnown RBP22.22■■□□□ 1.15
CLN3-240ENST00000631023 LRG1P02750 347 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 OR4Q2P0C623 313 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 MYL6P60660 151 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 SMARCB1Q12824 385 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 NCOA4Q13772 614 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 SOWAHAQ2M3V2 549 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 SV2AQ7L0J3 742 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 ADGRF2Q8IZF7 708 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 POLIQ9UNA4 740 aa22.22■■□□□ 1.15
CLN3-240ENST00000631023 DOCK8Q8NF50 2099 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 STX10O60499 249 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 CLSTN1O94985 981 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 POU2F2P09086 479 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 GTF2H1P32780 548 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 TNNC1P63316 161 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 TSPY1Q01534 308 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 PAK1Q13153 545 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 SGSM1Q2NKQ1 1148 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 DCP1BQ8IZD4 617 aaKnown RBP22.21■■□□□ 1.15
CLN3-240ENST00000631023 OR10T2Q8NGX3 314 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 CEP63Q96MT8 703 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 ACBD6Q9BR61 282 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 ZCWPW1Q9H0M4 648 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 WDR6Q9NNW5 1121 aaKnown RBP22.21■■□□□ 1.15
CLN3-240ENST00000631023 DDX43Q9NXZ2 648 aaKnown RBP22.21■■□□□ 1.15
CLN3-240ENST00000631023 CTNND2Q9UQB3 1225 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 TNFRSF10AO00220 468 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 CCL16O15467 120 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 SEC24AO95486 1093 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 FAM163BP0C2L3 166 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 PCSK1P29120 753 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 MCCD1P59942 119 aaPredicted RBP22.21■■□□□ 1.15
CLN3-240ENST00000631023 ZNF699Q32M78 642 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 C1orf220Q5T0J3 134 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 PGLYRP2Q96PD5 576 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 RTP3Q9BQQ7 232 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 XYLT2Q9H1B5 865 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 VRTNQ9H8Y1 702 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 INSL5Q9Y5Q6 135 aa22.21■■□□□ 1.15
CLN3-240ENST00000631023 NOTCH4Q99466 2003 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 LOC730098B7Z3J9 87 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 GABRDO14764 452 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 TRIM49P0CI25 452 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 TRIM49CP0CI26 452 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 GCLMP48507 274 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 SLC39A12Q504Y0 691 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 ZNF667Q5HYK9 610 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 TTI2Q6NXR4 508 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 LIMS2Q7Z4I7 341 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 FILIP1Q7Z7B0 1213 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 ELMOD1Q8N336 334 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 MLKLQ8NB16 471 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 FEZF2Q8TBJ5 459 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 C2orf15Q8WU43 125 aaKnown RBP22.2■■□□□ 1.14
CLN3-240ENST00000631023 TAF4BQ92750 862 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 TMEM209Q96SK2 561 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 METTL14Q9HCE5 456 aaKnown RBP22.2■■□□□ 1.14
CLN3-240ENST00000631023 HSFX1Q9UBD0 423 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 NXF1Q9UBU9 619 aaKnown RBP22.2■■□□□ 1.14
CLN3-240ENST00000631023 ARMCX3Q9UH62 379 aaPredicted RBP22.2■■□□□ 1.14
CLN3-240ENST00000631023 USTQ9Y2C2 406 aa22.2■■□□□ 1.14
CLN3-240ENST00000631023 P4HA1P13674 534 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 PIK3CAP42336 1068 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 PPP3CAQ08209 521 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 DUSP4Q13115 394 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 PLD1Q13393 1074 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms