RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 SLC23A3Q6PIS1 610 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 RASSF3Q86WH2 238 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 SYT12Q8IV01 421 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 TMEFF1Q8IYR6 380 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 CEP120Q8N960 986 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 APPL2Q8NEU8 664 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 PIGOQ8TEQ8 1089 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 ADAMTS14Q8WXS8 1223 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 PSMG2Q969U7 264 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 CAMK1GQ96NX5 476 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 HSD17B14Q9BPX1 270 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 GTPBP2Q9BX10 602 aaKnown RBP15.21■□□□□ 0.03
SNX1-214ENST00000625244 SLC46A2Q9BY10 475 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 TBX20Q9UMR3 447 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 CCL26Q9Y258 94 aa15.21■□□□□ 0.03
SNX1-214ENST00000625244 ATXN2Q99700 1313 aaKnown RBP15.2■□□□□ 0.02
SNX1-214ENST00000625244 TNFRSF10BO14763 440 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 MARCH6O60337 910 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 IFNAR1P17181 557 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 GJA4P35212 333 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 ALDH1A3P47895 512 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 RNF20Q5VTR2 975 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 TTC9BQ8N6N2 239 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 FRMD1Q8N878 549 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 MDGA1Q8NFP4 955 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 RIN3Q8TB24 985 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 BRF1Q92994 677 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 C18orf25Q96B23 403 aaPredicted RBP15.2■□□□□ 0.02
SNX1-214ENST00000625244 CNOT6LQ96LI5 555 aaKnown RBP15.2■□□□□ 0.02
SNX1-214ENST00000625244 CCDC43Q96MW1 224 aaKnown RBP15.2■□□□□ 0.02
SNX1-214ENST00000625244 TBC1D32Q96NH3 1257 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 FNBP1Q96RU3 617 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 C2orf40Q9H1Z8 148 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 SLC38A7Q9NVC3 462 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 ASB3Q9Y575 518 aa15.2■□□□□ 0.02
SNX1-214ENST00000625244 COL12A1Q99715 3063 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 ANTXRLA6NF34 631 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 FGF19O95750 216 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 CFIP05156 583 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 CD59P13987 128 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 MCM4P33991 863 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 ATXN3P54252 364 aaPredicted RBP15.19■□□□□ 0.02
SNX1-214ENST00000625244 AMPD2Q01433 879 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 TRIP6Q15654 476 aaKnown RBP15.19■□□□□ 0.02
SNX1-214ENST00000625244 NT5DC1Q5TFE4 455 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 CENPPQ6IPU0 288 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 Q6ZUG5 572 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 LPCAT2Q7L5N7 544 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 ATAD1Q8NBU5 361 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 OR2I1PQ8NGU4 316 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 OLIG1Q8TAK6 271 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 RLN3Q8WXF3 142 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 SLC39A7Q92504 469 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 UBL7Q96S82 380 aaPredicted RBP15.19■□□□□ 0.02
SNX1-214ENST00000625244 IL21Q9HBE4 155 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 NCOA5Q9HCD5 579 aaKnown RBP15.19■□□□□ 0.02
SNX1-214ENST00000625244 PCDHB8Q9UN66 801 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 TIMM13Q9Y5L4 95 aaPredicted RBP15.19■□□□□ 0.02
SNX1-214ENST00000625244 MGAQ8IWI9 3026 aa15.19■□□□□ 0.02
SNX1-214ENST00000625244 CCNT1O60563 726 aaKnown RBP15.18■□□□□ 0.02
SNX1-214ENST00000625244 OPHN1O60890 802 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 FTH1P19P0C7X4 201 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 MARCKSP29966 332 aaPredicted RBP15.18■□□□□ 0.02
SNX1-214ENST00000625244 RPL9P32969 192 aaKnown RBP15.18■□□□□ 0.02
SNX1-214ENST00000625244 OSTNP61366 133 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 GPR17Q13304 367 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 TSGA10IPQ3SY00 556 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 ATF7IP2Q5U623 682 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 ERICH6BQ5W0A0 696 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 KRT25Q7Z3Z0 450 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 CMTM8Q8IZV2 173 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 TMEM130Q8N3G9 435 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 LPIN3Q9BQK8 851 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 KIFC3Q9BVG8 833 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 PILRBQ9UKJ0 227 aa15.18■□□□□ 0.02
SNX1-214ENST00000625244 SH3BP5O60239 455 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 OAZ2O95190 189 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 KCNE1P15382 129 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 GCFC2P16383 781 aaKnown RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 ITPKAP23677 461 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 GRM5P41594 1212 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 YARSP54577 528 aaKnown RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 YWHAHQ04917 246 aaPredicted RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 HNRNPDQ14103 355 aaKnown RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 PEAR1Q5VY43 1037 aaPredicted RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 NEK8Q86SG6 692 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 TTC30AQ86WT1 665 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 MINDY1Q8N5J2 469 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 USP13Q92995 863 aaPredicted RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 CD101Q93033 1021 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 CIZ1Q9ULV3 898 aaPredicted RBP15.17■□□□□ 0.02
SNX1-214ENST00000625244 SLC6A14Q9UN76 642 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 RAI2Q9Y5P3 530 aa15.17■□□□□ 0.02
SNX1-214ENST00000625244 PIEZO2Q9H5I5 2752 aa15.16■□□□□ 0.02
SNX1-214ENST00000625244 ADAMTS9Q9P2N4 1935 aa15.16■□□□□ 0.02
SNX1-214ENST00000625244 TNRC6BQ9UPQ9 1833 aaKnown RBP15.16■□□□□ 0.02
SNX1-214ENST00000625244 MTMR11A4FU01 709 aa15.16■□□□□ 0.02
SNX1-214ENST00000625244 TK2O00142 265 aa15.16■□□□□ 0.02
SNX1-214ENST00000625244 MAP3K13O43283 966 aa15.16■□□□□ 0.02
SNX1-214ENST00000625244 HNRNPLP14866 589 aaKnown RBP eCLIP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms