RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 CFAP221Q4G0U5 840 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 PABPC1LQ4VXU2 614 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 BZW1Q7L1Q6 419 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 BRSK2Q8IWQ3 736 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 RNF25Q96BH1 459 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 RMDN1Q96DB5 314 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 NHSQ6T4R5 1651 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 CRCPO75575 148 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 CDH6P55285 790 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 BASP1P80723 227 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 CREMQ03060 361 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 IFT43Q96FT9 208 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 KBTBD4Q9NVX7 518 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 UTP11Q9Y3A2 253 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 F5H423 210 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 ZRANB2O95218 330 aaKnown RBP eCLIP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 HDCP19113 662 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 SOX5P35711 763 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 PTPN11Q06124 597 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 SEMA3FQ13275 785 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 RARS2Q5T160 578 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 DCLRE1AQ6PJP8 1040 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 RGL4Q8IZJ4 473 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 UXTQ9UBK9 157 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 ANKRD63C9JTQ0 380 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 ACADMP11310 421 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 GPC5P78333 572 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 TFDP2Q14188 446 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 EFHC1Q5JVL4 640 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 C1orf186Q6ZWK4 172 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 DIS3LQ8TF46 1054 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 HEMGNQ9BXL5 484 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 FSD1LQ9BXM9 530 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 MAF1Q9H063 256 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 HAUS4Q9H6D7 363 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 TMEM134Q9H6X4 195 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 ALG13Q9NP73 1137 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 TLR8Q9NR97 1041 aaKnown RBP9.59□□□□□ -0.87
HDAC9-229ENST00000622668 CISHQ9NSE2 258 aa9.59□□□□□ -0.87
HDAC9-229ENST00000622668 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 B4GALT4O60513 344 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 RNASEH1O60930 286 aaKnown RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 NFICP08651 508 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 NDST1P52848 882 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 COG7P83436 770 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 SP2Q02086 613 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 KCNA1Q09470 495 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 FUT2Q10981 343 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 ZNF177Q13360 481 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CEP112Q8N8E3 955 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CCT6BQ92526 530 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 EDEM1Q92611 657 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 MAGOHBQ96A72 148 aaKnown RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 VPS37BQ9H9H4 285 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 NHEJ1Q9H9Q4 299 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 MYADML2A6NDP7 307 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 H3BRJ5 948 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 M0QYT0 321 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 FTCDO95954 541 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 F2P00734 622 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 PFKMP08237 780 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 RPL17P18621 184 aaKnown RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 PMLP29590 882 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 TWF1Q12792 350 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 DRP2Q13474 957 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 KDELC2Q7Z4H8 507 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 MAP4K3Q8IVH8 894 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 PALM2Q8IXS6 379 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CARNMT1Q8N4J0 409 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 TTC8Q8TAM2 541 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 N4BP2L2Q92802 583 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 TMEM161AQ9NX61 479 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CACNA1FO60840 1977 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 AKAP3O75969 853 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CYBAP13498 195 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 UCHL3P15374 230 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 TKTL1P51854 596 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 BCAT1P54687 386 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 CCDC15Q0P6D6 951 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 DENND5BQ6ZUT9 1274 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 RHOT2Q8IXI1 618 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 ATP6V0D2Q8N8Y2 350 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 C1orf131Q8NDD1 294 aaKnown RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 SLC2A14Q8TDB8 520 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 RIPOR3Q96MK2 946 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 FBXO44Q9H4M3 255 aa9.58□□□□□ -0.88
HDAC9-229ENST00000622668 DMAP1Q9NPF5 467 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 V9GYY5 206 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-229ENST00000622668 F5H5T6 163 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 ZNF197O14709 1029 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 TEX33O43247 280 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 KCNA5P22460 613 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 GABRR2P28476 465 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 ATICP31939 592 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 DUSP4Q13115 394 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 AAK1Q2M2I8 961 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 SDHAF4Q5VUM1 108 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 KCNT2Q6UVM3 1135 aa9.57□□□□□ -0.88
HDAC9-229ENST00000622668 MYLK4Q86YV6 388 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms