RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 APPL2Q8NEU8 664 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.65□□□□□ -1.5
SHMT1-211ENST00000618902 PARD3BQ8TEW8 1205 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 PPM1EQ8WY54 764 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 PIK3R5Q8WYR1 880 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 CCDC127Q96BQ5 260 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 ACSF2Q96CM8 615 aaPredicted RBP5.65□□□□□ -1.5
SHMT1-211ENST00000618902 DHTKD1Q96HY7 919 aaPredicted RBP5.65□□□□□ -1.5
SHMT1-211ENST00000618902 CGRRF1Q99675 332 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 TTPALQ9BTX7 342 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 MTMR12Q9C0I1 747 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 DNAJC25Q9H1X3 360 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 KCNF1Q9H3M0 494 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 SFXN1Q9H9B4 322 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 PRDM6Q9NQX0 595 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.65□□□□□ -1.5
SHMT1-211ENST00000618902 ZMYM5Q9UJ78 669 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 DSEQ9UL01 958 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 UBQLN1Q9UMX0 589 aaKnown RBP5.65□□□□□ -1.5
SHMT1-211ENST00000618902 C2CD2Q9Y426 696 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 BACE2Q9Y5Z0 518 aa5.65□□□□□ -1.5
SHMT1-211ENST00000618902 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LOC730098B7Z3J9 87 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 H7C4K7 107 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 RIOK3O14730 519 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 PSMA7O14818 248 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 MAPK13O15264 365 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LINC01565O15544 149 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 MBTPS2O43462 519 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 HCRTO43612 131 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CALUO43852 315 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TBC1D4O60343 1298 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 STX10O60499 249 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 GLUD1P00367 558 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CST3P01034 146 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 C4BPAP04003 597 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 DLATP10515 647 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 RPL17P18621 184 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 FGFR3P22607 806 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 KLRC2P26717 231 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ERCC5P28715 1186 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TKTP29401 623 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 POLR2BP30876 1174 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 PNPLA4P41247 253 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CLCN4P51793 760 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LILRA4P59901 499 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ZP2Q05996 745 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LRRC63Q05C16 580 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 GABPB1Q06547 395 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 PAK1Q13153 545 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 NCAPHQ15003 741 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CCDC142Q17RM4 750 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TDRD10Q5VZ19 366 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 PLPP4Q5VZY2 271 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TPGS2Q68CL5 300 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 SMYD5Q6GMV2 418 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 FOXR2Q6PJQ5 311 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 PRSS55Q6UWB4 352 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CCDC149Q6ZUS6 474 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 OTOP3Q7RTS5 596 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TRAPPC11Q7Z392 1133 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LIMS2Q7Z4I7 341 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 BMP8AQ7Z5Y6 402 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 USP37Q86T82 979 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 OSTM1Q86WC4 334 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 WDR49Q8IV35 697 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 DHX40Q8IX18 779 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 FAM186BQ8IYM0 893 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ZDHHC14Q8IZN3 488 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CCAR2Q8N163 923 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 LEMD2Q8NC56 503 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 BEST2Q8NFU1 509 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ENOX1Q8TC92 643 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TMC2Q8TDI7 906 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CACTINQ8WUQ7 758 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 SEMA4DQ92854 862 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 SUSD3Q96L08 255 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CEP295NLQ96MC4 621 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ZNF830Q96NB3 372 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 RTP3Q9BQQ7 232 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 NAA15Q9BXJ9 866 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 XYLT2Q9H1B5 865 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 IRF2BPLQ9H1B7 796 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 HSD3B7Q9H2F3 369 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 FAM124BQ9H5Z6 455 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 AVENQ9NQS1 362 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 ARGLU1Q9NWB6 273 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 DPP3Q9NY33 737 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 CLEC1BQ9P126 229 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 AGAP1Q9UPQ3 857 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 NME7Q9Y5B8 376 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 TIMM13Q9Y5L4 95 aaPredicted RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 HCFC2Q9Y5Z7 792 aa5.64□□□□□ -1.51
SHMT1-211ENST00000618902 RIF1Q5UIP0 2472 aaKnown RBP5.64□□□□□ -1.51
SHMT1-211ENST00000618902 SOBPA7XYQ1 873 aa5.63□□□□□ -1.51
SHMT1-211ENST00000618902 M0QZQ0 153 aa5.63□□□□□ -1.51
SHMT1-211ENST00000618902 TULP1O00294 542 aaPredicted RBP5.63□□□□□ -1.51
SHMT1-211ENST00000618902 C2CD2LO14523 706 aa5.63□□□□□ -1.51
SHMT1-211ENST00000618902 PER2O15055 1255 aa5.63□□□□□ -1.51
SHMT1-211ENST00000618902 CETN3O15182 167 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms