RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MTHFRP42898 656 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 GCLMP48507 274 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 FMO5P49326 533 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 RAB27AP51159 221 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 AFF1P51825 1210 aaKnown RBP10.18□□□□□ -0.78
TRIM28-208ENST00000597172 UBXN1Q04323 297 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 UBE3AQ05086 875 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 ITIH3Q06033 890 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 RING1Q06587 406 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 SURF1Q15526 300 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 ZBTB6Q15916 424 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 FILIP1LQ4L180 1135 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 JADE1Q6IE81 842 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 C15orf39Q6ZRI6 1047 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 SV2AQ7L0J3 742 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 WDR49Q8IV35 697 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 KDF1Q8NAX2 398 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-208ENST00000597172 GSTCDQ8NEC7 633 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 ATRIPQ8WXE1 791 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 MRFAP1L1Q96HT8 127 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 FNBP1Q96RU3 617 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 TMEM117Q9H0C3 514 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 ASB7Q9H672 318 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 PARD6AQ9NPB6 346 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 C1orf112Q9NSG2 853 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 MIOSQ9NXC5 875 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 CNTN3Q9P232 1028 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 PARP2Q9UGN5 583 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 DUSP12Q9UNI6 340 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 SMG5Q9UPR3 1016 aaKnown RBP10.18□□□□□ -0.78
TRIM28-208ENST00000597172 USTQ9Y2C2 406 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 SDK1Q7Z5N4 2213 aa10.18□□□□□ -0.78
TRIM28-208ENST00000597172 SMIM28A0A1B0GU29 152 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 C1QTNF9BB2RNN3 333 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 TAF4O00268 1085 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 PES1O00541 588 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 PTGESO14684 152 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 CBFA2T2O43439 604 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 OFD1O75665 1012 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 VNN1O95497 513 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 EOMESO95936 686 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 TPM2P07951 284 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 NFICP08651 508 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 C1QTNF9P0C862 333 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 SKIP12755 728 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 TNNI1P19237 187 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 KLK7P49862 253 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 YARSP54577 528 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 ERVFC1P60507 584 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 PDE12Q6L8Q7 609 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 UNQ6494/PRO21346Q6UXR6 183 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 CD302Q8IX05 232 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 CMTR2Q8IYT2 770 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 LMO3Q8TAP4 145 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 CXorf38Q8TB03 319 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 DDX1Q92499 740 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 SEMA4DQ92854 862 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 ZFP42Q96MM3 310 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 ERGIC2Q96RQ1 377 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 GAD1Q99259 594 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 CRACR2AQ9BSW2 395 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 ELAC1Q9H777 363 aaKnown RBP10.17□□□□□ -0.78
TRIM28-208ENST00000597172 MMRN2Q9H8L6 949 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 TBC1D17Q9HA65 648 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 TMEM8AQ9HCN3 771 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 WNT16Q9UBV4 365 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 SIK3Q9Y2K2 1263 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 GIT1Q9Y2X7 761 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 COQ4Q9Y3A0 265 aa10.17□□□□□ -0.78
TRIM28-208ENST00000597172 HECTD1Q9ULT8 2610 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 A0A1W2PQC6 194 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 KRBA1A5PL33 1030 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 ARL5CA6NH57 179 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 INPPL1O15357 1258 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 P4HA2O15460 535 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 STX10O60499 249 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 CST3P01034 146 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 KCNE1P15382 129 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 SLC9A1P19634 815 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 IBSPP21815 317 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 PON1P27169 355 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 GUCY2FP51841 1108 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 AP3M2P53677 418 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 TFAMQ00059 246 aaKnown RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 APBA1Q02410 837 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 SYCP1Q15431 976 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 NAB2Q15742 525 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 DUOXA2Q1HG44 320 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 ZNF528Q3MIS6 628 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 ZACNQ401N2 412 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 CLLU1OSQ5K130 101 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 TDRD10Q5VZ19 366 aaKnown RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 KRT39Q6A163 491 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 TRAPPC11Q7Z392 1133 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 USP37Q86T82 979 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 VSTM4Q8IW00 320 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 MAML2Q8IZL2 1156 aaPredicted RBP10.16□□□□□ -0.78
TRIM28-208ENST00000597172 RNF169Q8NCN4 708 aa10.16□□□□□ -0.78
TRIM28-208ENST00000597172 EHBP1Q8NDI1 1231 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms