RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 OTOAQ7RTW8 1153 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 FRMD5Q7Z6J6 570 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 GRAPLQ8TC17 118 aaPredicted RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 FAM111AQ96PZ2 611 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 MXD3Q9BW11 206 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 FBXO6Q9NRD1 293 aaPredicted RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 NINJ2Q9NZG7 142 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 DAPK2Q9UIK4 370 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ARHGAP26Q9UNA1 814 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 C1orf232A0A0U1RR37 186 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 NDUFB5O43674 189 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 NR3C1P04150 777 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 RAP1GDS1P52306 607 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 HIRAP54198 1017 aaPredicted RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 ITGADQ13349 1161 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 SH3D19Q5HYK7 790 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 RINT1Q6NUQ1 792 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 CASC4Q6P4E1 433 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 PACS1Q6VY07 963 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ZNF398Q8TD17 642 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ATG4AQ8WYN0 398 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 COA7Q96BR5 231 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 SLC4A9Q96Q91 983 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 FAM118BQ9BPY3 351 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 APOL6Q9BWW8 343 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 MRPS26Q9BYN8 205 aaKnown RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 GIMAP4Q9NUV9 329 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 COQ6Q9Y2Z9 468 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 MAD1L1Q9Y6D9 718 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 C3P01024 1663 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 DAB1O75553 588 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 SERPINB1P30740 379 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 IL17AQ16552 155 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 USP17L2Q6R6M4 530 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 PTF1AQ7RTS3 328 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 CMTM5Q96DZ9 223 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 BORCS6Q96GS4 357 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 COQ7Q99807 217 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 FOXP3Q9BZS1 431 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 ACTL7BQ9Y614 415 aa12.9□□□□□ -0.35
LIG1-207ENST00000594759 KPNA4O00629 521 aaPredicted RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 ADRA1DP25100 572 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 NSFP46459 744 aaKnown RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 RGS21Q2M5E4 152 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 HGSNATQ68CP4 663 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 SH3RF3Q8TEJ3 882 aaPredicted RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 VTI1AQ96AJ9 217 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PIGSQ96S52 555 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 AGPAT1Q99943 283 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PPCSQ9HAB8 311 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 STRIP2Q9ULQ0 834 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PPEF1O14829 653 aaPredicted RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 MAP3K13O43283 966 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 CNOT3O75175 753 aaKnown RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 DEAF1O75398 565 aaPredicted RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 HOXD12P35452 270 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 ARSEP51690 589 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 CASP7P55210 303 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PRKG1Q13976 671 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 TBCCQ15814 346 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 ITPRIPL1Q6GPH6 555 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 USP33Q8TEY7 942 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PLA2G12BQ9BX93 195 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 TMEM260Q9NX78 707 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 ARHGEF37A1IGU5 675 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 WTIPA6NIX2 430 aaPredicted RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 OR6B1O95007 311 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 SP4Q02446 784 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 KNOP1Q1ED39 458 aaKnown RBP12.89□□□□□ -0.35
LIG1-207ENST00000594759 AADACL2Q6P093 401 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 POU5F2Q8N7G0 328 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 PPM1NQ8N819 430 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 FADS3Q9Y5Q0 445 aa12.89□□□□□ -0.35
LIG1-207ENST00000594759 FAM205AQ6ZU69 1335 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 F8W8V4 182 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 RBAK-RBAKDNI3L0D1 243 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 NTSR2O95665 410 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 PABPC4LP0CB38 370 aaKnown RBP12.88□□□□□ -0.35
LIG1-207ENST00000594759 KLRK1P26718 216 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 CLCN2P51788 898 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 MYBPC2Q14324 1141 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 HIF1AQ16665 826 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 ULK2Q8IYT8 1036 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 CPXCR1Q8N123 301 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TAS2R1Q9NYW7 299 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 ARIH1Q9Y4X5 557 aaPredicted RBP12.88□□□□□ -0.35
LIG1-207ENST00000594759 ABCC6O95255 1503 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TCP10L2B9ZVM9 353 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TDP2O95551 362 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SLC16A2P36021 539 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 FLOT2Q14254 428 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 DGKHQ86XP1 1220 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 FAM178BQ8IXR5 827 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 E2F7Q96AV8 911 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 BHMT2Q9H2M3 363 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SPC25Q9HBM1 224 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TUBGCP4Q9UGJ1 667 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 BCS1LQ9Y276 419 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 CLRN2A0PK11 232 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 BBOX1O75936 387 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms