RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 STAG3L1P0CL83 205 aa20.89■□□□□ 0.93
CLIP3-206ENST00000593074 ZNF157P51786 506 aaPredicted RBP20.89■□□□□ 0.93
CLIP3-206ENST00000593074 EIF3BP55884 814 aaKnown RBP20.89■□□□□ 0.93
CLIP3-206ENST00000593074 GRIK4Q16099 956 aa20.89■□□□□ 0.93
CLIP3-206ENST00000593074 C1orf54Q8WWF1 131 aa20.89■□□□□ 0.93
CLIP3-206ENST00000593074 ART4Q93070 314 aa20.89■□□□□ 0.93
CLIP3-206ENST00000593074 PPP1R16BQ96T49 567 aa20.89■□□□□ 0.93
CLIP3-206ENST00000593074 PABPC3Q9H361 631 aaKnown RBP20.89■□□□□ 0.93
CLIP3-206ENST00000593074 MTRF1LQ9UGC7 380 aaKnown RBP20.89■□□□□ 0.93
CLIP3-206ENST00000593074 EIF3HO15372 352 aaKnown RBP eCLIP20.88■□□□□ 0.93
CLIP3-206ENST00000593074 ZEB2O60315 1214 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 GJB6O95452 261 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 ITGBL1O95965 494 aaPredicted RBP20.88■□□□□ 0.93
CLIP3-206ENST00000593074 NUDT17P0C025 328 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 PMS2P54278 862 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 RPL7AP62424 266 aaKnown RBP20.88■□□□□ 0.93
CLIP3-206ENST00000593074 SYDE1Q6ZW31 735 aaPredicted RBP20.88■□□□□ 0.93
CLIP3-206ENST00000593074 WDTC1Q8N5D0 677 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 EXD1Q8NHP7 514 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 DCLK3Q9C098 648 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 CHST7Q9NS84 486 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 CWC15Q9P013 229 aaKnown RBP20.88■□□□□ 0.93
CLIP3-206ENST00000593074 POLIQ9UNA4 740 aa20.88■□□□□ 0.93
CLIP3-206ENST00000593074 LACTBL1A8MY62 500 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 CSDE1O75534 798 aaKnown RBP20.87■□□□□ 0.93
CLIP3-206ENST00000593074 GNGT1P63211 74 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 ZNF252P-AS1Q0IIN9 211 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 MAP2K5Q13163 448 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 LLGL1Q15334 1064 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 PPP1R15BQ5SWA1 713 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 MORN1Q5T089 497 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 AGBL2Q5U5Z8 902 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 CXorf38Q8TB03 319 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 CEP83Q9Y592 693 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 MANSC4A6NHS7 340 aaPredicted RBP20.87■□□□□ 0.93
CLIP3-206ENST00000593074 ECM2O94769 699 aaPredicted RBP20.87■□□□□ 0.93
CLIP3-206ENST00000593074 RALAP11233 206 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 TAP1Q03518 808 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 KRT17Q04695 432 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 PPP1R7Q15435 360 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 KYAT1Q16773 422 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 ZNF667Q5HYK9 610 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 MARCH8Q5T0T0 291 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 JADE1Q6IE81 842 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 DNAJC24Q6P3W2 148 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 NLRP7Q8WX94 980 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 ASB7Q9H672 318 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 VRTNQ9H8Y1 702 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 NMRK2Q9NPI5 230 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 HOMER3Q9NSC5 361 aa20.87■□□□□ 0.93
CLIP3-206ENST00000593074 NXF1Q9UBU9 619 aaKnown RBP20.87■□□□□ 0.93
CLIP3-206ENST00000593074 IGF2BP3O00425 579 aaKnown RBP eCLIP20.86■□□□□ 0.93
CLIP3-206ENST00000593074 DYNC1LI2O43237 492 aaPredicted RBP20.86■□□□□ 0.93
CLIP3-206ENST00000593074 KRT19P08727 400 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 ARF4P18085 180 aaPredicted RBP20.86■□□□□ 0.93
CLIP3-206ENST00000593074 PTK6Q13882 451 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 TAF1CQ15572 869 aaPredicted RBP20.86■□□□□ 0.93
CLIP3-206ENST00000593074 PRAMEF19Q5SWL8 479 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 RASAL3Q86YV0 1011 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 CCDC50Q8IVM0 306 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 C3orf20Q8ND61 904 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 GRK7Q8WTQ7 553 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 ATG4AQ8WYN0 398 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 SCLT1Q96NL6 688 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 LHX5Q9H2C1 402 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 WHRNQ9P202 907 aa20.86■□□□□ 0.93
CLIP3-206ENST00000593074 ADCY6O43306 1168 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 PAEPP09466 180 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 ATP1A2P50993 1020 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 LACTBP83111 547 aaPredicted RBP20.85■□□□□ 0.93
CLIP3-206ENST00000593074 LRRC38Q5VT99 294 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 CPB2Q96IY4 423 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 MCEEQ96PE7 176 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 OSBPL8Q9BZF1 889 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 ZNF236Q9UL36 1845 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 RRN3P2A6NIE6 340 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 TP73O15350 636 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 ITGB3P05106 788 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 ATICP31939 592 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 RAP1GAPP47736 663 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 SNX1Q13596 522 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 WDR72Q3MJ13 1102 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 ERICH1Q86X53 443 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 KIAA0319LQ8IZA0 1049 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 USTQ9Y2C2 406 aa20.85■□□□□ 0.93
CLIP3-206ENST00000593074 R3HDM2Q9Y2K5 976 aaKnown RBP20.85■□□□□ 0.93
CLIP3-206ENST00000593074 MED7O43513 233 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 RAD23BP54727 409 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 PDCLQ13371 301 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 IRF5Q13568 498 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 SLMAPQ14BN4 828 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 SLC10A6Q3KNW5 377 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 NIPA2Q8N8Q9 360 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 SDCBP2Q9H190 292 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 CENPHQ9H3R5 247 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 FEZ2Q9UHY8 353 aaPredicted RBP20.84■□□□□ 0.93
CLIP3-206ENST00000593074 STRIP2Q9ULQ0 834 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 A6NJR5 290 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 TSPAN1O60635 241 aa20.84■□□□□ 0.93
CLIP3-206ENST00000593074 OGDHQ02218 1023 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms