RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DOCK8Q8NF50 2099 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 BICDL2A1A5D9 508 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 C19orf67A6NJJ6 358 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 PPP1R3GB7ZBB8 358 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 PRRG1O14668 218 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 XYLBO75191 536 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 CST3P01034 146 aaPredicted RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 C4BPAP04003 597 aaKnown RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 WEE2P0C1S8 567 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 CD44P16070 742 aaKnown RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 PMS1P54277 932 aaKnown RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 MCCD1P59942 119 aaPredicted RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 DLG4P78352 724 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 SMARCB1Q12824 385 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 GPR17Q13304 367 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 ZACNQ401N2 412 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 SCARA3Q6AZY7 606 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 LIMS2Q7Z4I7 341 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 SMG7Q92540 1137 aaKnown RBP12.78□□□□□ -0.36
LIG3-213ENST00000590630 NUP62CLQ9H1M0 184 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 POMKQ9H5K3 350 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 VRTNQ9H8Y1 702 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 CDH22Q9UJ99 828 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 L1RE1Q9UN81 338 aa12.78□□□□□ -0.36
LIG3-213ENST00000590630 TRIM49BA6NDI0 452 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 LOC730098B7Z3J9 87 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 DLL1O00548 723 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 SSTR3P32745 418 aaPredicted RBP12.77□□□□□ -0.37
LIG3-213ENST00000590630 GTF2H1P32780 548 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 LHX1P48742 406 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 MYL6P60660 151 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 ADCY1Q08828 1119 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 PAK1Q13153 545 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 NCOA4Q13772 614 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 SOWAHAQ2M3V2 549 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 WDR72Q3MJ13 1102 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 C1orf220Q5T0J3 134 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 KLHL10Q6JEL2 608 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 TTI2Q6NXR4 508 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 RNF19BQ6ZMZ0 732 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 SV2AQ7L0J3 742 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 ADGRF2Q8IZF7 708 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 GJD3Q8N144 294 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 OR10T2Q8NGX3 314 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 NELFBQ8WX92 580 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 EEF2KMTQ96G04 330 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 CEP63Q96MT8 703 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 RTP3Q9BQQ7 232 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 ACBD6Q9BR61 282 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 ZCWPW1Q9H0M4 648 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 XYLT2Q9H1B5 865 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 PIDD1Q9HB75 910 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 CYP4F11Q9HBI6 524 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 WDR6Q9NNW5 1121 aaKnown RBP12.77□□□□□ -0.37
LIG3-213ENST00000590630 HSFX1Q9UBD0 423 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 USTQ9Y2C2 406 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 NR2E1Q9Y466 385 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 NOTCH4Q99466 2003 aa12.77□□□□□ -0.37
LIG3-213ENST00000590630 MYO10Q9HD67 2058 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 TNFRSF10AO00220 468 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 GABRDO14764 452 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 STX10O60499 249 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 LRG1P02750 347 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 FAM163BP0C2L3 166 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 OR4Q2P0C623 313 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 TRIM49P0CI25 452 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 TRIM49CP0CI26 452 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 PCSK1P29120 753 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 TNNC1P63316 161 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 MYL7Q01449 175 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 TSPY1Q01534 308 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 SGSM1Q2NKQ1 1148 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 ZNF699Q32M78 642 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 DCP1BQ8IZD4 617 aaKnown RBP12.76□□□□□ -0.37
LIG3-213ENST00000590630 FEZF2Q8TBJ5 459 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 GPT2Q8TD30 523 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 C2orf15Q8WU43 125 aaKnown RBP12.76□□□□□ -0.37
LIG3-213ENST00000590630 TAF4BQ92750 862 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 RPGRIP1Q96KN7 1286 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 MMS19Q96T76 1030 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 DDX43Q9NXZ2 648 aaKnown RBP12.76□□□□□ -0.37
LIG3-213ENST00000590630 CTNND2Q9UQB3 1225 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 INSL5Q9Y5Q6 135 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 CLUHO75153 1309 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 PTPRDP23468 1912 aa12.76□□□□□ -0.37
LIG3-213ENST00000590630 MTMR11A4FU01 709 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 CCL16O15467 120 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 TACC1O75410 805 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 SEC24AO95486 1093 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 VNN1O95497 513 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 MBD3O95983 291 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 P4HA1P13674 534 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 PIK3CAP42336 1068 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 GCLMP48507 274 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 PPP3CAQ08209 521 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 SLC39A12Q504Y0 691 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 ZNF667Q5HYK9 610 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 OTOP3Q7RTS5 596 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 FILIP1Q7Z7B0 1213 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 MLKLQ8NB16 471 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms