RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 C8orf33Q9H7E9 229 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-204ENST00000590559 IL21Q9HBE4 155 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 PARD6AQ9NPB6 346 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 C2CD2Q9Y426 696 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 KIAA1549LQ6ZVL6 1849 aa12.73□□□□□ -0.37
CLIP3-204ENST00000590559 GREB1Q4ZG55 1949 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 ANAPC1Q9H1A4 1944 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 TISP43B9A030 160 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 K7ENM7 598 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 K7ESF4 209 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 PPP1R37O75864 691 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 SOAT2O75908 522 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 ODC1P11926 461 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 ATF6P18850 670 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 PLCG1P19174 1290 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 NMT1P30419 496 aaKnown RBP12.72□□□□□ -0.37
CLIP3-204ENST00000590559 ABCD1P33897 745 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 LONP1P36776 959 aaKnown RBP12.72□□□□□ -0.37
CLIP3-204ENST00000590559 UBA7P41226 1012 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 CCR3P51677 355 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 ATXN1P54253 815 aaKnown RBP12.72□□□□□ -0.37
CLIP3-204ENST00000590559 SATB1Q01826 763 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 TXNDC11Q6PKC3 985 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 SPEM1Q8N4L4 309 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 CELF5Q8N6W0 485 aaKnown RBP12.72□□□□□ -0.37
CLIP3-204ENST00000590559 CALML4Q96GE6 196 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 MYO16Q9Y6X6 1858 aa12.72□□□□□ -0.37
CLIP3-204ENST00000590559 PRR5-ARHGAP8B1AHC4 643 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 FAM13AO94988 1023 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 FGF19O95750 216 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 GABRR2P28476 465 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 ADSSP30520 456 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 CTHP32929 405 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 DDIT3P35638 169 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 SOX9P48436 509 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 ARHGAP8P85298 464 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 CCINQ13939 588 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 TMEM132DQ14C87 1099 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 KARSQ15046 597 aaKnown RBP12.71□□□□□ -0.37
CLIP3-204ENST00000590559 ARHGAP29Q52LW3 1261 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 ZC2HC1CQ53FD0 456 aaPredicted RBP12.71□□□□□ -0.37
CLIP3-204ENST00000590559 TMEM150AQ86TG1 271 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 LRRTM3Q86VH5 581 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 RALGPS2Q86X27 583 aaPredicted RBP12.71□□□□□ -0.37
CLIP3-204ENST00000590559 LARP4BQ92615 738 aaKnown RBP12.71□□□□□ -0.37
CLIP3-204ENST00000590559 CHFRQ96EP1 664 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 SLITRK6Q9H5Y7 841 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 C2orf42Q9NWW7 574 aa12.71□□□□□ -0.37
CLIP3-204ENST00000590559 EPG5Q9HCE0 2579 aa12.71□□□□□ -0.38
CLIP3-204ENST00000590559 SPAG17Q6Q759 2223 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SPTBN2O15020 2390 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SLC38A8A6NNN8 435 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SPECC1L-ADORA2AF8WAN1 911 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 H3BQV1 296 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 HRO43593 1189 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 PRAMEF12O95522 483 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 BMP15O95972 392 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SDHBP21912 280 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 HOXA6P31267 233 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 CXCL12P48061 93 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 TUFMP49411 452 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ACOT2P49753 483 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 LMNB2Q03252 620 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 DMWDQ09019 674 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 DHX8Q14562 1220 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 PPP2R5DQ14738 602 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SLC39A12Q504Y0 691 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 GPR158Q5T848 1215 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 LAIR1Q6GTX8 287 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ARMCX5Q6P1M9 558 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ZNF720Q7Z2F6 126 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 BRAPQ7Z569 592 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ITIH5Q86UX2 942 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 GPIHBP1Q8IV16 184 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 EFCAB13Q8IY85 973 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 CXorf38Q8TB03 319 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 CSGALNACT1Q8TDX6 532 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 C2orf15Q8WU43 125 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SECISBP2LQ93073 1101 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ZFYVE19Q96K21 471 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 LPIN3Q9BQK8 851 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 SLC46A2Q9BY10 475 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 IKZF4Q9H2S9 585 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 ATXN3LQ9H3M9 355 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 TASP1Q9H6P5 420 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 RBM12Q9NTZ6 932 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 GTSE1Q9NYZ3 720 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 AGO2Q9UKV8 859 aaKnown RBP12.7□□□□□ -0.38
CLIP3-204ENST00000590559 DSEQ9UL01 958 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 PTPRDP23468 1912 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 WDFY3Q8IZQ1 3526 aa12.7□□□□□ -0.38
CLIP3-204ENST00000590559 HELZP42694 1942 aaKnown RBP12.69□□□□□ -0.38
CLIP3-204ENST00000590559 CYB561D2O14569 222 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 LRP3O75074 770 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 RETP07949 1114 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 HAPLN1P10915 354 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-204ENST00000590559 HMGA1P17096 107 aaKnown RBP12.69□□□□□ -0.38
CLIP3-204ENST00000590559 CNR2P34972 360 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 WNT7BP56706 349 aa12.69□□□□□ -0.38
CLIP3-204ENST00000590559 SMARCB1Q12824 385 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms