RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 PPEF2O14830 753 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 XPOTO43592 962 aaKnown RBP12.15□□□□□ -0.46
SMAD4-211ENST00000590499 ADH1CP00326 375 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 AFMP43652 599 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 NDUFA8P51970 172 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 NUCB2P80303 420 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 RAB33AQ14088 237 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 ANKS3Q6ZW76 656 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 BRSK2Q8IWQ3 736 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 EFCAB13Q8IY85 973 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 CEP57L1Q8IYX8 460 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 ZNF507Q8TCN5 953 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 LRRN4Q8WUT4 740 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 SCFD1Q8WVM8 642 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 PAGE5Q96GU1 130 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 RIPOR3Q96MK2 946 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 EPHX3Q9H6B9 360 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 GDPD2Q9HCC8 539 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 DPP7Q9UHL4 492 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 USP25Q9UHP3 1055 aa12.15□□□□□ -0.46
SMAD4-211ENST00000590499 UBE4BO95155 1302 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 ANO9A1A5B4 782 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 PIRO00625 290 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 RFPL2O75678 378 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 SPATA31D3P0C874 917 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 MCM4P33991 863 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 TMEM132DQ14C87 1099 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 BMT2Q1RMZ1 405 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 ATAT1Q5SQI0 421 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 SLC8B1Q6J4K2 584 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 CYP26C1Q6V0L0 522 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 SPATA31D4Q6ZUB0 917 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 STXBP4Q6ZWJ1 553 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 RNF135Q8IUD6 432 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 SYCP3Q8IZU3 236 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 TMEM151AQ8N4L1 468 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 KREMEN2Q8NCW0 462 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 SAAL1Q96ER3 474 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 RPGRIP1Q96KN7 1286 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 FAM213AQ9BRX8 229 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 KLF16Q9BXK1 252 aaPredicted RBP12.14□□□□□ -0.47
SMAD4-211ENST00000590499 GOLPH3LQ9H4A5 285 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 C11orf16Q9NQ32 467 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 ZDHHC7Q9NXF8 308 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 NUB1Q9Y5A7 615 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 CDY1Q9Y6F8 540 aa12.14□□□□□ -0.47
SMAD4-211ENST00000590499 CCDC195A0A1B0GUA6 201 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 KIAA0391O15091 583 aaKnown RBP12.13□□□□□ -0.47
SMAD4-211ENST00000590499 TGFB1I1O43294 461 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 DCXO43602 365 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 EXTL3O43909 919 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 IL18RAPO95256 599 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 MYL1P05976 194 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 OR1D2P34982 312 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 SYKP43405 635 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 LILRA4P59901 499 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 C9orf57Q5W0N0 161 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 ARMCX5Q6P1M9 558 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 ELMSAN1Q6PJG2 1045 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 NT5DC4Q86YG4 428 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 FSIP1Q8NA03 581 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 BEST2Q8NFU1 509 aa12.13□□□□□ -0.47
SMAD4-211ENST00000590499 GOLGA8IPA6NC78 632 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 GOLGA8JA6NMD2 632 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 C2CD4DB7Z1M9 353 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 OAZ2O95190 189 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 LDHAP00338 332 aaKnown RBP12.12□□□□□ -0.47
SMAD4-211ENST00000590499 POU2F2P09086 479 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 HOXA9P31269 272 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 WDR4P57081 412 aaKnown RBP12.12□□□□□ -0.47
SMAD4-211ENST00000590499 ROR1Q01973 937 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 CCDC149Q6ZUS6 474 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 GPD1LQ8N335 351 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 KIAA0895Q8NCT3 520 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 APPL2Q8NEU8 664 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 CXorf38Q8TB03 319 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 PCIF1Q9H4Z3 704 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 WDR6Q9NNW5 1121 aaKnown RBP12.12□□□□□ -0.47
SMAD4-211ENST00000590499 SLC39A2Q9NP94 309 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 AGPAT3Q9NRZ7 376 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 RBAKQ9NYW8 714 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-211ENST00000590499 HSPBP1Q9NZL4 362 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 MUTYHQ9UIF7 546 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 FBXL5Q9UKA1 691 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 USTQ9Y2C2 406 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 NR2E1Q9Y466 385 aa12.12□□□□□ -0.47
SMAD4-211ENST00000590499 ZDBF2Q9HCK1 2354 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 WDR27A2RRH5 827 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 H7C4K7 107 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 ABLIM3O94929 683 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 C8AP07357 584 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 HNRNPA1P09651 372 aaKnown RBP eCLIP12.11□□□□□ -0.47
SMAD4-211ENST00000590499 ALADP13716 330 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 TYMPP19971 482 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 SP100P23497 879 aaPredicted RBP12.11□□□□□ -0.47
SMAD4-211ENST00000590499 PAX3P23760 479 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 SNRPFP62306 86 aaKnown RBP12.11□□□□□ -0.47
SMAD4-211ENST00000590499 STK4Q13043 487 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 LIN9Q5TKA1 542 aa12.11□□□□□ -0.47
SMAD4-211ENST00000590499 ZNF280DQ6N043 979 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms