RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CRELD2Q6UXH1 353 aaPredicted RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 EPM2AIP1Q7L775 607 aaPredicted RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 ITIH5Q86UX2 942 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 C1orf210Q8IVY1 113 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 DCP1BQ8IZD4 617 aaKnown RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 SLC44A3Q8N4M1 653 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 DCLK2Q8N568 766 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 PJA1Q8NG27 643 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 BORCS6Q96GS4 357 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SENP8Q96LD8 212 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 CEP295NLQ96MC4 621 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 FAM213AQ9BRX8 229 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SLC2A4RGQ9NR83 387 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 DLL3Q9NYJ7 618 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 RBAKQ9NYW8 714 aaPredicted RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 DLGAP2Q9P1A6 1054 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 CACNG4Q9UBN1 327 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 TUBGCP4Q9UGJ1 667 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SIT1Q9Y3P8 196 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 CHD6Q8TD26 2715 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SCN1AP35498 2009 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 WDR27A2RRH5 827 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 KINO60870 393 aaKnown RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 CPB1P15086 417 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 ALDH1A3P47895 512 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 LHX1P48742 406 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 EPHB3P54753 998 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 EPHA5P54756 1037 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 NFE2Q16621 373 aaPredicted RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 RSPO4Q2I0M5 234 aaPredicted RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 RSPO2Q6UXX9 243 aaPredicted RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 GRASPQ7Z6J2 395 aaPredicted RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 SPPL2BQ8TCT7 592 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 LEO1Q8WVC0 666 aaPredicted RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 ANKRD36BP1Q96IX9 119 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 CNTNAP3BQ96NU0 1288 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 CNTNAP3Q9BZ76 1288 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 CYP4F11Q9HBI6 524 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 GDAP2Q9NXN4 497 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 NCDNQ9UBB6 729 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 MRPS23Q9Y3D9 190 aaKnown RBP11.32□□□□□ -0.6
LIG3-212ENST00000590181 NUMBLQ9Y6R0 609 aa11.32□□□□□ -0.6
LIG3-212ENST00000590181 I3L4J1 428 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 CYB561D2O14569 222 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ADAM12O43184 909 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 HUS1O60921 280 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 LRRN2O75325 713 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ECI2O75521 394 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 KRT37O76014 449 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 TNNC2P02585 160 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 GLULP15104 373 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 SYKP43405 635 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ENPEPQ07075 957 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ADCY1Q08828 1119 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 KNOP1Q1ED39 458 aaKnown RBP11.31□□□□□ -0.6
LIG3-212ENST00000590181 C1orf228Q6PIY5 440 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 WDR49Q8IV35 697 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 SLC9A9Q8IVB4 645 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 TOP6BLQ8N6T0 577 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 XXYLT1Q8NBI6 393 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ST13P5Q8NFI4 369 aaPredicted RBP11.31□□□□□ -0.6
LIG3-212ENST00000590181 FGF13Q92913 245 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 NELL2Q99435 816 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ACBD6Q9BR61 282 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ABCB6Q9NP58 842 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 DNMT3BQ9UBC3 853 aaKnown RBP11.31□□□□□ -0.6
LIG3-212ENST00000590181 POLIQ9UNA4 740 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 INSL5Q9Y5Q6 135 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 ZFHX4Q86UP3 3567 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 COL4A2P08572 1712 aa11.31□□□□□ -0.6
LIG3-212ENST00000590181 PDXKO00764 312 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 MAPK13O15264 365 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 SPTLC1O15269 473 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 CCL16O15467 120 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 PRPF6O94906 941 aaKnown RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 RHOP08100 348 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 NFICP08651 508 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 TMEM191BP0C7N4 346 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 PCSK1P29120 753 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 WEE1P30291 646 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 CASP5P51878 434 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 MLLT6P55198 1093 aaPredicted RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 TFAMQ00059 246 aaKnown RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 MYL7Q01449 175 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 TSPY1Q01534 308 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 KCNA1Q09470 495 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 MAPRE1Q15691 268 aaKnown RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 SNRNP35Q16560 246 aaKnown RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 ZBTB41Q5SVQ8 909 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 CENPPQ6IPU0 288 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 PDZD4Q76G19 769 aaPredicted RBP11.3□□□□□ -0.6
LIG3-212ENST00000590181 CSGALNACT2Q8N6G5 542 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 SUMF1Q8NBK3 374 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 ELSPBP1Q96BH3 223 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 PAGE5Q96GU1 130 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 FNBP1Q96RU3 617 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 TRPV4Q9HBA0 871 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 TRPV5Q9NQA5 729 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 ASAH2Q9NR71 780 aa11.3□□□□□ -0.6
LIG3-212ENST00000590181 EXOC1Q9NV70 894 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms