RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 STAU1O95793 577 aaKnown RBP20.77■□□□□ 0.92
SS18-208ENST00000577751 ELF1P32519 619 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 SSTR3P32745 418 aaPredicted RBP20.77■□□□□ 0.92
SS18-208ENST00000577751 VAMP7P51809 220 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 LRRC63Q05C16 580 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 TDRD10Q5VZ19 366 aaKnown RBP20.77■□□□□ 0.92
SS18-208ENST00000577751 INTS8Q75QN2 995 aaKnown RBP20.77■□□□□ 0.92
SS18-208ENST00000577751 FAM186BQ8IYM0 893 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 THEM5Q8N1Q8 247 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 GBP4Q96PP9 640 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 MKNK1Q9BUB5 465 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 ZCWPW1Q9H0M4 648 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 XYLT2Q9H1B5 865 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 CYP4F11Q9HBI6 524 aa20.77■□□□□ 0.92
SS18-208ENST00000577751 PPP1R3GB7ZBB8 358 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 GABRDO14764 452 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 PSMA7O14818 248 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 CETN3O15182 167 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 CCNE1P24864 410 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 ATICP31939 592 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 FKBP3Q00688 224 aaKnown RBP20.76■□□□□ 0.91
SS18-208ENST00000577751 STIM1Q13586 685 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 CAMK4Q16566 473 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 SOWAHAQ2M3V2 549 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 ZACNQ401N2 412 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 TRIML1Q8N9V2 468 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 TSG101Q99816 390 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 VRTNQ9H8Y1 702 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 PIDD1Q9HB75 910 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 NR2E1Q9Y466 385 aa20.76■□□□□ 0.91
SS18-208ENST00000577751 NOTCH4Q99466 2003 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 TRIM49BA6NDI0 452 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 BIN1O00499 593 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 PRRG1O14668 218 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 CCL16O15467 120 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 VNN1O95497 513 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 MYL6P60660 151 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 FOXR2Q6PJQ5 311 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 SV2AQ7L0J3 742 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 KHSRPQ92945 711 aaKnown RBP eCLIP20.75■□□□□ 0.911e-7■■■□□ 19.2
SS18-208ENST00000577751 EEF2KMTQ96G04 330 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 PGLYRP2Q96PD5 576 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 ACBD6Q9BR61 282 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 CRISPLD1Q9H336 500 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 HSFX1Q9UBD0 423 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 INSL5Q9Y5Q6 135 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 CUL9Q8IWT3 2517 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 CLUHO75153 1309 aa20.75■□□□□ 0.91
SS18-208ENST00000577751 MTMR11A4FU01 709 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 C2CD4DB7Z1M9 353 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 PHACTR2O75167 634 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 XYLBO75191 536 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 FAM163BP0C2L3 166 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 TRPC3Q13507 836 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 LRRTM3Q86VH5 581 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 OSTM1Q86WC4 334 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 RNF135Q8IUD6 432 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 SYAP1Q96A49 352 aaPredicted RBP20.74■□□□□ 0.91
SS18-208ENST00000577751 CLSTN2Q9H4D0 955 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 DDX43Q9NXZ2 648 aaKnown RBP20.74■□□□□ 0.91
SS18-208ENST00000577751 BDP1A6H8Y1 2624 aa20.74■□□□□ 0.91
SS18-208ENST00000577751 LRG1P02750 347 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 KRT13P13646 458 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 LHX1P48742 406 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 PPP3CAQ08209 521 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 SMARCB1Q12824 385 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 DUSP4Q13115 394 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 BIRC3Q13489 604 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 NCOA4Q13772 614 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 WDR72Q3MJ13 1102 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 GRASPQ7Z6J2 395 aaPredicted RBP20.73■□□□□ 0.91
SS18-208ENST00000577751 ADGRF2Q8IZF7 708 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 ZDHHC14Q8IZN3 488 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 ATAD1Q8NBU5 361 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 KBTBD7Q8WVZ9 684 aa20.73■□□□□ 0.91
SS18-208ENST00000577751 DNMT3BQ9UBC3 853 aaKnown RBP20.73■□□□□ 0.91
SS18-208ENST00000577751 SLC16A3O15427 465 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 N4BP1O75113 896 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 TACC1O75410 805 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 TRIM49P0CI25 452 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 TRIM49CP0CI26 452 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 WARSP23381 471 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 SP100P23497 879 aaPredicted RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 MYL7Q01449 175 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 SLC39A12Q504Y0 691 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 TTI2Q6NXR4 508 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 OTOP3Q7RTS5 596 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 DCP1BQ8IZD4 617 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 PLCD3Q8N3E9 789 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 C2orf15Q8WU43 125 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 PKMYT1Q99640 499 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 DUSP9Q99956 384 aaKnown RBP20.72■□□□□ 0.91
SS18-208ENST00000577751 HCFC1R1Q9NWW0 138 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 POLIQ9UNA4 740 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 DOCK8Q8NF50 2099 aa20.72■□□□□ 0.91
SS18-208ENST00000577751 PI4K2BG5E9Z4 385 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 EPB41P11171 864 aaKnown RBP20.71■□□□□ 0.91
SS18-208ENST00000577751 GTF2H1P32780 548 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 NTHL1P78549 312 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 INTS6LQ5JSJ4 861 aaKnown RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms