RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 SEC24AO95486 1093 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 CST3P01034 146 aaPredicted RBP14.59□□□□□ -0.07
CIITA-210ENST00000575513 LRG1P02750 347 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 C4BPAP04003 597 aaKnown RBP14.59□□□□□ -0.07
CIITA-210ENST00000575513 CASP4P49662 377 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 LRRC63Q05C16 580 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 BFSP1Q12934 665 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 PLD1Q13393 1074 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 STIM1Q13586 685 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 CEP135Q66GS9 1140 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 RNF19BQ6ZMZ0 732 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 SMYD4Q8IYR2 804 aaPredicted RBP14.59□□□□□ -0.07
CIITA-210ENST00000575513 DCP1BQ8IZD4 617 aaKnown RBP14.59□□□□□ -0.07
CIITA-210ENST00000575513 FEZF2Q8TBJ5 459 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 PLEKHO2Q8TD55 490 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 DHTKD1Q96HY7 919 aaPredicted RBP14.59□□□□□ -0.07
CIITA-210ENST00000575513 TSG101Q99816 390 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 RTP3Q9BQQ7 232 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 C1QTNF1Q9BXJ1 281 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 VRTNQ9H8Y1 702 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 L1RE1Q9UN81 338 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 INSL5Q9Y5Q6 135 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 SNX9Q9Y5X1 595 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 PLXNA3P51805 1871 aa14.59□□□□□ -0.07
CIITA-210ENST00000575513 CETN3O15182 167 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 CCL16O15467 120 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 AKAP3O75969 853 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 MICAL2O94851 1124 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 PTPN2P17706 415 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 FKBP3Q00688 224 aaKnown RBP14.58□□□□□ -0.08
CIITA-210ENST00000575513 TRPC3Q13507 836 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 SOWAHAQ2M3V2 549 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 SCARA3Q6AZY7 606 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 ZC3H3Q8IXZ2 948 aaKnown RBP14.58□□□□□ -0.08
CIITA-210ENST00000575513 ELMOD1Q8N336 334 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 TRIML1Q8N9V2 468 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 OR10T2Q8NGX3 314 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 NXPE3Q969Y0 559 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 SYAP1Q96A49 352 aaPredicted RBP14.58□□□□□ -0.08
CIITA-210ENST00000575513 FAM84AQ96KN4 292 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 EPS15L1Q9UBC2 864 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 MAN1B1Q9UKM7 699 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 SCN1AP35498 2009 aa14.58□□□□□ -0.08
CIITA-210ENST00000575513 MTMR11A4FU01 709 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 PSMA7O14818 248 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 PHACTR2O75167 634 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 TACC1O75410 805 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 VNN2O95498 520 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 KRT13P13646 458 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 FSHRP23945 695 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 PCSK1P29120 753 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 GTF2H1P32780 548 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 TUFMP49411 452 aaKnown RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 VAMP7P51809 220 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 MYL7Q01449 175 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 TSPY1Q01534 308 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 DUSP4Q13115 394 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 MORC3Q14149 939 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 NFE2Q16621 373 aaPredicted RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 ZACNQ401N2 412 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 TDRD10Q5VZ19 366 aaKnown RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 GRASPQ7Z6J2 395 aaPredicted RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 FAM186BQ8IYM0 893 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 ADGRF2Q8IZF7 708 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 LEMD2Q8NC56 503 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 SPPL2BQ8TCT7 592 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 TAF4BQ92750 862 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 ERCC4Q92889 916 aaPredicted RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 KHSRPQ92945 711 aaKnown RBP eCLIP14.57□□□□□ -0.08
CIITA-210ENST00000575513 XYLT2Q9H1B5 865 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 DDX43Q9NXZ2 648 aaKnown RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 IGSF9Q9P2J2 1179 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 DNMT3BQ9UBC3 853 aaKnown RBP14.57□□□□□ -0.08
CIITA-210ENST00000575513 POLIQ9UNA4 740 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 ASB3Q9Y575 518 aa14.57□□□□□ -0.08
CIITA-210ENST00000575513 SLC16A3O15427 465 aaKnown RBP14.56□□□□□ -0.08
CIITA-210ENST00000575513 N4BP1O75113 896 aaKnown RBP14.56□□□□□ -0.08
CIITA-210ENST00000575513 OR4Q2P0C623 313 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 WARSP23381 471 aaKnown RBP14.56□□□□□ -0.08
CIITA-210ENST00000575513 CCNE1P24864 410 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 ALDH1A3P47895 512 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 DLG4P78352 724 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 BIRC3Q13489 604 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 NCOA4Q13772 614 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 SGSM1Q2NKQ1 1148 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 WDR72Q3MJ13 1102 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 PABPC1LQ4VXU2 614 aaKnown RBP14.56□□□□□ -0.08
CIITA-210ENST00000575513 SLC39A12Q504Y0 691 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 C1orf220Q5T0J3 134 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 ANKRD40Q6AI12 368 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 IQCEQ6IPM2 695 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 SV2AQ7L0J3 742 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 LRRTM3Q86VH5 581 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 ATAD1Q8NBU5 361 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 ZNF512Q96ME7 567 aaPredicted RBP14.56□□□□□ -0.08
CIITA-210ENST00000575513 TMEM209Q96SK2 561 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 EPHX3Q9H6B9 360 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 ABCB6Q9NP58 842 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 KIAA1468Q9P260 1216 aa14.56□□□□□ -0.08
CIITA-210ENST00000575513 LIMD1Q9UGP4 676 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms