RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TBX10O75333 385 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CLSTN1O94985 981 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 PAPLNO95428 1278 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 VNN1O95497 513 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CAVIN2O95810 425 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 GLP2RO95838 553 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 HLA-DRAP01903 254 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 HNRNPA1P09651 372 aaKnown RBP eCLIP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CPB1P15086 417 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 RPL17P18621 184 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 KCNA5P22460 613 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 WARSP23381 471 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 EEF1GP26641 437 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 HOXA9P31269 272 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 FMO5P49326 533 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 MRPS5P82675 430 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 TSPY1Q01534 308 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 ROR1Q01973 937 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 MAPRE1Q15691 268 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 NFE2Q16621 373 aaPredicted RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 SOWAHAQ2M3V2 549 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 WDR44Q5JSH3 913 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 WSCD1Q658N2 575 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 LLGL2Q6P1M3 1020 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 GLYCTKQ8IVS8 523 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 TRIM59Q8IWR1 403 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 ADGRF2Q8IZF7 708 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 KREMEN2Q8NCW0 462 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CNOT6LQ96LI5 555 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 MED15Q96RN5 788 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 MMRN2Q9H8L6 949 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CYP3A43Q9HB55 503 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 RAB20Q9NX57 234 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 DDX43Q9NXZ2 648 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 CLEC1BQ9P126 229 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 FBXW11Q9UKB1 542 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 L1RE1Q9UN81 338 aa10.25□□□□□ -0.77
CCDC40-214ENST00000575431 TIMM13Q9Y5L4 95 aaPredicted RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 MTCL1Q9Y4B5 1905 aaKnown RBP10.25□□□□□ -0.77
CCDC40-214ENST00000575431 SMTNL1A8MU46 457 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ZMYND10O75800 440 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 AFPP02771 609 aaKnown RBP10.24□□□□□ -0.77
CCDC40-214ENST00000575431 POU2F2P09086 479 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 EPCAMP16422 314 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ARPP19P56211 112 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 TYRO3Q06418 890 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 KCNH2Q12809 1159 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 SMAD4Q13485 552 aaKnown RBP10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ATAT1Q5SQI0 421 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 RSPO2Q6UXX9 243 aaPredicted RBP10.24□□□□□ -0.77
CCDC40-214ENST00000575431 CREBRFQ8IUR6 639 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 TCEAL8Q8IYN2 117 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 TMEM130Q8N3G9 435 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ANKRD20A12PQ8NF67 263 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 VN1R2Q8NFZ6 395 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 SPPL2BQ8TCT7 592 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 TAS1R2Q8TE23 839 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 FAM84AQ96KN4 292 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 RIPOR3Q96MK2 946 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 NECTIN4Q96NY8 510 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 BPIFA3Q9BQP9 254 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ZCWPW1Q9H0M4 648 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 ADAM7Q9H2U9 754 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 SNX25Q9H3E2 840 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 MAN1C1Q9NR34 630 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 NXF1Q9UBU9 619 aaKnown RBP10.24□□□□□ -0.77
CCDC40-214ENST00000575431 CDH9Q9ULB4 789 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 BARX2Q9UMQ3 279 aaPredicted RBP10.24□□□□□ -0.77
CCDC40-214ENST00000575431 NFE2L3Q9Y4A8 694 aa10.24□□□□□ -0.77
CCDC40-214ENST00000575431 TSC2P49815 1807 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 WDR27A2RRH5 827 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 GTPBP10A4D1E9 387 aaKnown RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 H3BQ06 376 aaPredicted RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 PRRG1O14668 218 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 ADAM12O43184 909 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 XYLBO75191 536 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 C8AP07357 584 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 TPM2P07951 284 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 TBXAS1P24557 533 aaPredicted RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 GNL1P36915 607 aaPredicted RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 MTHFRP42898 656 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 MTIF2P46199 727 aaKnown RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 TUFMP49411 452 aaKnown RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 NOP14P78316 857 aaKnown RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 MYL5Q02045 173 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 DLX2Q07687 328 aaPredicted RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 ADCY1Q08828 1119 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 PLD1Q13393 1074 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 NFKBIBQ15653 356 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 MAN2A1Q16706 1144 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 CBWD6Q4V339 395 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 INTS6LQ5JSJ4 861 aaKnown RBP10.23□□□□□ -0.77
CCDC40-214ENST00000575431 CBWD3Q5JTY5 395 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 CBWD5Q5RIA9 395 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 PPM1LQ5SGD2 360 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 SMYD5Q6GMV2 418 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 SYCE2Q6PIF2 218 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 GPR149Q86SP6 731 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 UNC93AQ86WB7 457 aa10.23□□□□□ -0.77
CCDC40-214ENST00000575431 IRF2BP1Q8IU81 584 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms