RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GRIN1Q05586 938 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 GAS6Q14393 721 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 TMEM132DQ14C87 1099 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ITIH5Q86UX2 942 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 LRRC3BQ96PB8 259 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ZCWPW1Q9H0M4 648 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ATXN3LQ9H3M9 355 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ST6GALNAC4Q9H4F1 302 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ZHX3Q9H4I2 956 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 OBP2AQ9NY56 170 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 STYXL1Q9Y6J8 313 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 SCN1AP35498 2009 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 TBCAO75347 108 aaKnown RBP22.81■■□□□ 1.24
VPS53-216ENST00000574029 GABRR2P28476 465 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 WEE1P30291 646 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 CXCL12P48061 93 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 ACOT2P49753 483 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 KPNA1P52294 538 aaPredicted RBP22.81■■□□□ 1.24
VPS53-216ENST00000574029 SATB1Q01826 763 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 LRRC32Q14392 662 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 GPIHBP1Q8IV16 184 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 SPEM1Q8N4L4 309 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 CELF5Q8N6W0 485 aaKnown RBP22.81■■□□□ 1.24
VPS53-216ENST00000574029 LARP4BQ92615 738 aaKnown RBP22.81■■□□□ 1.24
VPS53-216ENST00000574029 DSEQ9UL01 958 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 SMC3Q9UQE7 1217 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 C2CD2Q9Y426 696 aa22.81■■□□□ 1.24
VPS53-216ENST00000574029 MYBPHLA2RUH7 354 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 SLC38A8A6NNN8 435 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 PRR5-ARHGAP8B1AHC4 643 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 SOX9P48436 509 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 TUFMP49411 452 aaKnown RBP22.8■■□□□ 1.24
VPS53-216ENST00000574029 ARHGAP8P85298 464 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 LMNB2Q03252 620 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 ARHGAP29Q52LW3 1261 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 ZC2HC1CQ53FD0 456 aaPredicted RBP22.8■■□□□ 1.24
VPS53-216ENST00000574029 ARHGAP15Q53QZ3 475 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 WDR44Q5JSH3 913 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 GPR158Q5T848 1215 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 LARP1BQ659C4 914 aaKnown RBP22.8■■□□□ 1.24
VPS53-216ENST00000574029 SLFN12LQ6IEE8 588 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 LPIN3Q9BQK8 851 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 GMEB2Q9UKD1 530 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 TCHHQ07283 1943 aa22.8■■□□□ 1.24
VPS53-216ENST00000574029 TISP43B9A030 160 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 SPECC1L-ADORA2AF8WAN1 911 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 ATF6P18850 670 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 DDIT3P35638 169 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 MCM2P49736 904 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 POU5F1Q01860 360 aaKnown RBP22.79■■□□□ 1.24
VPS53-216ENST00000574029 SLC39A12Q504Y0 691 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 ADALQ6DHV7 355 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 BRAPQ7Z569 592 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 RALGPS2Q86X27 583 aaPredicted RBP22.79■■□□□ 1.24
VPS53-216ENST00000574029 RASSF8Q8NHQ8 419 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 SEPT5Q99719 369 aaPredicted RBP22.79■■□□□ 1.24
VPS53-216ENST00000574029 CCSER1Q9C0I3 900 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 IL21Q9HBE4 155 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 PARD6AQ9NPB6 346 aa22.79■■□□□ 1.24
VPS53-216ENST00000574029 KIF26AQ9ULI4 1882 aaPredicted RBP22.79■■□□□ 1.24
VPS53-216ENST00000574029 CEP250Q9BV73 2442 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 DPYSL4O14531 572 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 CYB561D2O14569 222 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 PAPSS2O95340 614 aaPredicted RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 CTHP32929 405 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 TAF6P49848 677 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 ATXN1P54253 815 aaKnown RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 SF3A1Q15459 793 aaKnown RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 MGAT5BQ3V5L5 792 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 DGKKQ5KSL6 1271 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 LAIR1Q6GTX8 287 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 TXNDC11Q6PKC3 985 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 METTL23Q86XA0 190 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 FAM200AQ8TCP9 573 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 C2orf15Q8WU43 125 aaKnown RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 ZFYVE19Q96K21 471 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 TASP1Q9H6P5 420 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 RBM12Q9NTZ6 932 aaKnown RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 DPP3Q9NY33 737 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 GTSE1Q9NYZ3 720 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 AGO2Q9UKV8 859 aaKnown RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 RAB23Q9ULC3 237 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 USP18Q9UMW8 372 aa22.78■■□□□ 1.24
VPS53-216ENST00000574029 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.78■■□□□ 1.24
VPS53-216ENST00000574029 DENND4CQ5VZ89 1909 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 PRAMEF12O95522 483 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 CDC25CP30307 473 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 SMARCB1Q12824 385 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 VEPH1Q14D04 833 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 CRELD2Q6UXH1 353 aaPredicted RBP22.77■■□□□ 1.24
VPS53-216ENST00000574029 ZNF720Q7Z2F6 126 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 LRRTM3Q86VH5 581 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 THEM5Q8N1Q8 247 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 BPIFB1Q8TDL5 484 aa22.77■■□□□ 1.24
VPS53-216ENST00000574029 PYM1Q9BRP8 204 aaKnown RBP22.77■■□□□ 1.24
VPS53-216ENST00000574029 K7ESF4 209 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 CYP4F8P98187 520 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 PLCB2Q00722 1185 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 LPAL2Q16609 132 aa22.76■■□□□ 1.23
VPS53-216ENST00000574029 Q6ZS52 159 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms