RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	ANKRD20A3	Q5VUR7	823 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	LVRN	Q6Q4G3	990 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	RAB3IP	Q96QF0	476 aa	Predicted RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	USH1C	Q9Y6N9	552 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	SCIN	Q9Y6U3	715 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	ONECUT3	O60422	494 aa	Predicted RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	UPP2	O95045	317 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	C4BPA	P04003	597 aa	Known RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	ACO1	P21399	889 aa	Known RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	MTMR2	Q13614	643 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	STYK1	Q6J9G0	422 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	SAMD3	Q8N6K7	520 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	SLITRK1	Q96PX8	696 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	ZWILCH	Q9H900	591 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	RNF146	Q9NTX7	359 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	ZC3H11A	O75152	810 aa	Known RBP eCLIP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	BRD2	P25440	801 aa	Known RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	EPHB2	P29323	1055 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	LMNB2	Q03252	620 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	TAF11	Q15544	211 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	KCNT1	Q5JUK3	1230 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	DNAJC24	Q6P3W2	148 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	BZW1	Q7L1Q6	419 aa	Known RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	ATG4C	Q96DT6	458 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	NTPCR	Q9BSD7	190 aa	Known RBP	18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	MSTO1	Q9BUK6	570 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	CYP26B1	Q9NR63	512 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	AGTPBP1	Q9UPW5	1226 aa		18.04	■□□□□ 0.48
VPS53-215	ENST00000573028	DGAT1	O75907	488 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	NEFH	P12036	1026 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	PLEKHA7	Q6IQ23	1121 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	SCARA5	Q6ZMJ2	495 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	MCPH1	Q8NEM0	835 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	ZNF606	Q8WXB4	792 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	TCHP	Q9BT92	498 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	MAK16	Q9BXY0	300 aa	Known RBP	18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	UBN1	Q9NPG3	1134 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	EURL	Q9NYK6	297 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	IP6K2	Q9UHH9	426 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	ATP2A1	O14983	1001 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	WDR46	O15213	610 aa	Known RBP	18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	C15orf39	Q6ZRI6	1047 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	CENPU	Q71F23	418 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	LONP2	Q86WA8	852 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	RBM41	Q96IZ5	413 aa	Known RBP	18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	RPAP3	Q9H6T3	665 aa	Predicted RBP	18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	FBXO40	Q9UH90	709 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028	ACTL7B	Q9Y614	415 aa		18.03	■□□□□ 0.48
VPS53-215	ENST00000573028		K7ERI5	159 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	CCNB1	P14635	433 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	TFDP1	Q14186	410 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	PSMD6	Q15008	389 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	SPOCD1	Q6ZMY3	1216 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	RCOR2	Q8IZ40	523 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	DEPTOR	Q8TB45	409 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	HAPLN2	Q9GZV7	340 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	DEFB129	Q9H1M3	183 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	ADRA1D	P25100	572 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	PTP4A2	Q12974	167 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	EAPP	Q56P03	285 aa	Predicted RBP	18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	ZBTB33	Q86T24	672 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	SPDL1	Q96EA4	605 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	TRIM6	Q9C030	488 aa	Predicted RBP	18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	STARD13	Q9Y3M8	1113 aa		18.02	■□□□□ 0.48
VPS53-215	ENST00000573028	FGFR1	P11362	822 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	SESN3	P58005	492 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	OGDH	Q02218	1023 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	NCOA4	Q13772	614 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	TAF1B	Q53T94	588 aa	Predicted RBP	18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	RIBC1	Q8N443	379 aa	Predicted RBP	18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	ALLC	Q8N6M5	410 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	PYROXD1	Q8WU10	500 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	IMPG2	Q9BZV3	1241 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	DNAJC5	Q9H3Z4	198 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	UTRN	P46939	3433 aa		18.02	■□□□□ 0.47
VPS53-215	ENST00000573028	KIF1C	O43896	1103 aa	Known RBP	18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	PSAP	P07602	524 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	CCND2	P30279	289 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	RAD23B	P54727	409 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	HIF1A	Q16665	826 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	BBS9	Q3SYG4	887 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	RHPN2	Q8IUC4	686 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	TTC25	Q96NG3	672 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	TBC1D10A	Q9BXI6	508 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	JPH1	Q9HDC5	661 aa	Predicted RBP	18.01	■□□□□ 0.47
VPS53-215	ENST00000573028		A0A0G2JND7	137 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	EDF1	O60869	148 aa	Known RBP	18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	ABHD2	P08910	425 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	PEX19	P40855	299 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	NR1H3	Q13133	447 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	ACVR2B	Q13705	512 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	PDK4	Q16654	411 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	WDR72	Q3MJ13	1102 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	TRIM72	Q6ZMU5	477 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	OTOA	Q7RTW8	1153 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	MTDH	Q86UE4	582 aa	Known RBP	18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	DENND1A	Q8TEH3	1009 aa		18.01	■□□□□ 0.47
VPS53-215	ENST00000573028	AKT1S1	Q96B36	256 aa		18.01	■□□□□ 0.47

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