RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 COLEC11Q9BWP8 271 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 NAA15Q9BXJ9 866 aaKnown RBP11.19□□□□□ -0.62
CDH3-210ENST00000569117 BCO2Q9BYV7 579 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 FAM124BQ9H5Z6 455 aaPredicted RBP11.19□□□□□ -0.62
CDH3-210ENST00000569117 CEP72Q9P209 647 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 RABGEF1Q9UJ41 708 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 ADAM28Q9UKQ2 775 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 PRG3Q9Y2Y8 225 aaPredicted RBP11.19□□□□□ -0.62
CDH3-210ENST00000569117 PCDHA11Q9Y5I1 949 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 FHOD1Q9Y613 1164 aa11.19□□□□□ -0.62
CDH3-210ENST00000569117 COL4A4P53420 1690 aaPredicted RBP11.19□□□□□ -0.62
CDH3-210ENST00000569117 SF3B1O75533 1304 aaKnown RBP eCLIP11.18□□□□□ -0.62
CDH3-210ENST00000569117 A0A1W2PQJ5 194 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 M0QZQ0 153 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 GYPCP04921 128 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 ALDH2P05091 517 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 PBX3P40426 434 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 ALDH7A1P49419 539 aaKnown RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 LRMPQ12912 555 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 NR1H3Q13133 447 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 ELOAQ14241 798 aaKnown RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 IQCEQ6IPM2 695 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 GJB7Q6PEY0 223 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 SCARA5Q6ZMJ2 495 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 RETREG3Q86VR2 466 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 TMEM173Q86WV6 379 aaPredicted RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 TOP6BLQ8N6T0 577 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 SPATA18Q8TC71 538 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 HASPINQ8TF76 798 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 BCL7CQ8WUZ0 217 aaPredicted RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 RABGGTAQ92696 567 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 ELMO3Q96BJ8 720 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 SUSD3Q96L08 255 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 KREMEN1Q96MU8 473 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 EDEM3Q9BZQ6 932 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.18□□□□□ -0.62
CDH3-210ENST00000569117 AAASQ9NRG9 546 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 NXF1Q9UBU9 619 aaKnown RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 AJAP1Q9UKB5 411 aaPredicted RBP11.18□□□□□ -0.62
CDH3-210ENST00000569117 POLIQ9UNA4 740 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 FAN1Q9Y2M0 1017 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 RWDD3Q9Y3V2 267 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.18□□□□□ -0.62
CDH3-210ENST00000569117 SNX9Q9Y5X1 595 aa11.18□□□□□ -0.62
CDH3-210ENST00000569117 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 A0A1W2PPC1 479 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 ARHGEF37A1IGU5 675 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 LINC01553A4QN01 128 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 GRXCR1A8MXD5 290 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 F8VZ95 297 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 TRAPPC3O43617 180 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 EFEMP2O95967 443 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 CYP11A1P05108 521 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 ODC1P11926 461 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 HOXB1P14653 301 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 IGFBP6P24592 240 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 RABGGTBP53611 331 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 MFAP3P55082 362 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 JAM2P57087 298 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 POLR2FP61218 127 aaKnown RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 INCA1Q0VD86 236 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 ELAVL2Q12926 359 aaKnown RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 TBX2Q13207 712 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 RAB30Q15771 203 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 SOWAHAQ2M3V2 549 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 TIGD5Q53EQ6 642 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 SPOUT1Q5T280 376 aaKnown RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 FUT10Q6P4F1 479 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 RRAGAQ7L523 313 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 DPH6Q7L8W6 267 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 TMC6Q7Z403 805 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 RNF168Q8IYW5 571 aaPredicted RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 UBR7Q8N806 425 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 SHC3Q92529 594 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 ANP32BQ92688 251 aaKnown RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 KAT5Q92993 513 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 IGSF21Q96ID5 467 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 SENP8Q96LD8 212 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 SMYD3Q9H7B4 428 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 CYP3A43Q9HB55 503 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 DNAJC12Q9UKB3 198 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 MYO6Q9UM54 1294 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 L1RE1Q9UN81 338 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 ATG2AQ2TAZ0 1938 aa11.17□□□□□ -0.62
CDH3-210ENST00000569117 LAMA2P24043 3122 aaKnown RBP11.17□□□□□ -0.62
CDH3-210ENST00000569117 LAMA3Q16787 3333 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 NT5C1B-RDH14C9J2C7 533 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 CYB561D2O14569 222 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 SYN3O14994 580 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 HUS1O60921 280 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 MFAP3LO75121 409 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 TACC1O75410 805 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 TADA2AO75478 443 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 ARHGEF15O94989 841 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 CA3P07451 260 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 FAM163BP0C2L3 166 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 TYMPP19971 482 aa11.16□□□□□ -0.62
CDH3-210ENST00000569117 ACO1P21399 889 aaKnown RBP11.16□□□□□ -0.62
CDH3-210ENST00000569117 BRCC3P46736 316 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms