RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PGLYRP2Q96PD5 576 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 ASAH2Q9NR71 780 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 WNT16Q9UBV4 365 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 FBXL21Q9UKT6 434 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 C2orf16Q68DN1 1984 aa20.14■□□□□ 0.81
CLN3-227ENST00000567495 MTMR11A4FU01 709 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 EXOC3O60645 756 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 ZNF202O95125 648 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 RPN1P04843 607 aaKnown RBP20.13■□□□□ 0.81
CLN3-227ENST00000567495 NUBP1P53384 320 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 EPHA5P54756 1037 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 TSPY1Q01534 308 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 CYP24A1Q07973 514 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 BFSP1Q12934 665 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 DPH6Q7L8W6 267 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 SLC9A9Q8IVB4 645 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 PDCL2Q8N4E4 241 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 TOP6BLQ8N6T0 577 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 ATAD1Q8NBU5 361 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 KIAA0895Q8NCT3 520 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 RSAD2Q8WXG1 361 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 SMOC2Q9H3U7 446 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 CEP72Q9P209 647 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 RAPGEFL1Q9UHV5 662 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 SIX4Q9UIU6 781 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 NUMBLQ9Y6R0 609 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 MYO10Q9HD67 2058 aa20.13■□□□□ 0.81
CLN3-227ENST00000567495 PDXKO00764 312 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 RHOBTB3O94955 611 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 VNN2O95498 520 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 DLATP10515 647 aaKnown RBP20.12■□□□□ 0.81
CLN3-227ENST00000567495 TNNI1P19237 187 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 LHX1P48742 406 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 NFE2Q16621 373 aaPredicted RBP20.12■□□□□ 0.81
CLN3-227ENST00000567495 PRSS36Q5K4E3 855 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 ITIH5Q86UX2 942 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 RDH13Q8NBN7 331 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 OR5B17Q8NGF7 314 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 HPDLQ96IR7 371 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 CGRRF1Q99675 332 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 RTP3Q9BQQ7 232 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 ACBD6Q9BR61 282 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 MFSD1Q9H3U5 465 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 GDPD2Q9HCC8 539 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 SLC2A4RGQ9NR83 387 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 SNX9Q9Y5X1 595 aa20.12■□□□□ 0.81
CLN3-227ENST00000567495 FGF19O95750 216 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 PCSK1P29120 753 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 CLCN5P51795 746 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 AP3M2P53677 418 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 MYL7Q01449 175 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 DPYDQ12882 1025 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 KCNB1Q14721 858 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 SLC5A9Q2M3M2 681 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 SLC39A12Q504Y0 691 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 PARM1Q6UWI2 310 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 TRAPPC11Q7Z392 1133 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 SPPL2BQ8TCT7 592 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 CCDC127Q96BQ5 260 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 TMEM209Q96SK2 561 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 GPR88Q9GZN0 384 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 GOLPH3LQ9H4A5 285 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 DMAC2Q9NW81 257 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 L1RE1Q9UN81 338 aa20.11■□□□□ 0.81
CLN3-227ENST00000567495 PTPRJQ12913 1337 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 MUC6Q6W4X9 2439 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 ECI2O75521 394 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 AVPR2P30518 371 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 VEPH1Q14D04 833 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 LMBRD2Q68DH5 695 aaPredicted RBP20.1■□□□□ 0.81
CLN3-227ENST00000567495 ING5Q8WYH8 240 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 FGF14Q92915 247 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 CRISPLD1Q9H336 500 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 KCTD10Q9H3F6 313 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 SLC27A5Q9Y2P5 690 aa20.1■□□□□ 0.81
CLN3-227ENST00000567495 CALUO43852 315 aaPredicted RBP20.09■□□□□ 0.81
CLN3-227ENST00000567495 FAM163BP0C2L3 166 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 CEBPBP17676 345 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 PFKPQ01813 784 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 ASTLQ6HA08 431 aaPredicted RBP20.09■□□□□ 0.81
CLN3-227ENST00000567495 DNAJB7Q7Z6W7 309 aaPredicted RBP20.09■□□□□ 0.81
CLN3-227ENST00000567495 ADGRF2Q8IZF7 708 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 SIX5Q8N196 739 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 PSMG2Q969U7 264 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 FAM122AQ96E09 287 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 MCRS1Q96EZ8 462 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 ABCB6Q9NP58 842 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 DDX43Q9NXZ2 648 aaKnown RBP20.09■□□□□ 0.81
CLN3-227ENST00000567495 PCDHB5Q9Y5E4 795 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 DOCK8Q8NF50 2099 aa20.09■□□□□ 0.81
CLN3-227ENST00000567495 GABRDO14764 452 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 NARSO43776 548 aaKnown RBP20.08■□□□□ 0.81
CLN3-227ENST00000567495 PDGFBP01127 241 aaPredicted RBP20.08■□□□□ 0.81
CLN3-227ENST00000567495 NR3C1P04150 777 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 MYL4P12829 197 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 PLA2G5P39877 138 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 TRPC3Q13507 836 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 SOWAHAQ2M3V2 549 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 MGAT5BQ3V5L5 792 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 LIMS2Q7Z4I7 341 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms