RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 MIS12Q9H081 205 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 XYLT2Q9H1B5 865 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 CDT1Q9H211 546 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 ASB7Q9H672 318 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 ELP3Q9H9T3 547 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 RPF1Q9H9Y2 349 aaKnown RBP6.62□□□□□ -1.35
CLN3-223ENST00000566472 VTA1Q9NP79 307 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 AAASQ9NRG9 546 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 ERAP1Q9NZ08 941 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 LGALS13Q9UHV8 139 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 ANAPC5Q9UJX4 755 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 PNMA3Q9UL41 463 aa6.62□□□□□ -1.35
CLN3-223ENST00000566472 DICER1Q9UPY3 1922 aaKnown RBP6.62□□□□□ -1.35
CLN3-223ENST00000566472 PTPRFP10586 1907 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 KIAA1217Q5T5P2 1943 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 hCG_1818297A0A087WSY0 165 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 RBM47A0AV96 593 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 SIGLEC16A6NMB1 481 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ADM5C9JUS6 153 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 DNALI1O14645 258 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 TP73O15350 636 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 LIASO43766 372 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 C22orf31O95567 290 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 CST3P01034 146 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 CALCAP01258 141 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 CFHP08603 1231 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 SRGAP2CP0DJJ0 459 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 GHRP10912 638 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 P4HA1P13674 534 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 CHN1P15882 459 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 DRD4P21917 467 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 BRD2P25440 801 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 ADCY8P40145 1251 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 SEC24CP53992 1094 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 VCPP55072 806 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 LACTBP83111 547 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 TFAMQ00059 246 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 ZNF252P-AS1Q0IIN9 211 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 NR1H3Q13133 447 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 MOGSQ13724 837 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 LAMC2Q13753 1193 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 PRKG1Q13976 671 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ZNF268Q14587 947 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 ITIH4Q14624 930 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 MORF4L2Q15014 288 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 R3HDM1Q15032 1099 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 RASA2Q15283 850 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 TAZQ16635 292 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 HADHQ16836 314 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 LY6KQ17RY6 165 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 HSDL1Q3SXM5 330 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 TTC31Q49AM3 519 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 TFDP3Q5H9I0 405 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ZNF667Q5HYK9 610 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 GKAP1Q5VSY0 366 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 GPAT2Q6NUI2 795 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 DCUN1D2Q6PH85 259 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 SPOCD1Q6ZMY3 1216 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 USP50Q70EL3 339 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 APBB1IPQ7Z5R6 666 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 ZNF467Q7Z7K2 595 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 PCGF5Q86SE9 256 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ERICH1Q86X53 443 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 TDRPQ86YL5 185 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 RHPN2Q8IUC4 686 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ALLCQ8N6M5 410 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 NLGN2Q8NFZ4 835 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ATXN2LQ8WWM7 1075 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 ATG4AQ8WYN0 398 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 EMID1Q96A84 441 aaPredicted RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 CDCA5Q96FF9 252 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 OTUD5Q96G74 571 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 FAM84AQ96KN4 292 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 CFAP57Q96MR6 1250 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 SELENOSQ9BQE4 189 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 HERPUD2Q9BSE4 406 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 ADAM7Q9H2U9 754 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 PCDH9Q9HC56 1237 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 PPANQ9NQ55 473 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 INTS9Q9NV88 658 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 NINJ2Q9NZG7 142 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 RBPJLQ9UBG7 517 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 KIAA1257Q9ULG3 409 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 SHOC2Q9UQ13 582 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 USTQ9Y2C2 406 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 R3HDM2Q9Y2K5 976 aaKnown RBP6.61□□□□□ -1.35
CLN3-223ENST00000566472 SLC45A1Q9Y2W3 748 aa6.61□□□□□ -1.35
CLN3-223ENST00000566472 WDR81Q562E7 1941 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 GOLGA6L7A0A1B0GV03 622 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TLDC2A0PJX2 215 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 FAM170AA1A519 330 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TTLL13PA6NNM8 815 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 DCDC2CA8MYV0 355 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 INO80B-WBP1J3KQ70 363 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 TRIM66O15016 1216 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CDH16O75309 829 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 CAPN15O75808 1086 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 DDNO94850 711 aaPredicted RBP6.6□□□□□ -1.35
CLN3-223ENST00000566472 GH1P01241 217 aa6.6□□□□□ -1.35
CLN3-223ENST00000566472 HMGCRP04035 888 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms