RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FSD2A1L4K1 749 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 hCG_1984214I3L0E3 225 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 TBCAO75347 108 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 B3GALNT1O75752 331 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 STAM2O75886 525 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 ZNF202O95125 648 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CLEC2LP0C7M8 214 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 FERP16591 822 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 ATF3P18847 181 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 HPDP32754 393 aaPredicted RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 HSPA1LP34931 641 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 MAN2A2P49641 1150 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 PURAQ00577 322 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 EXOSC10Q01780 885 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 MEF2AQ02078 507 aaPredicted RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 ICA1Q05084 483 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 MGAT5Q09328 741 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 FAPQ12884 760 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 TRIM25Q14258 630 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 TNIP1Q15025 636 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 PDCD1Q15116 288 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 NFE2Q16621 373 aaPredicted RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 FSCN1Q16658 493 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 KIAA0753Q2KHM9 967 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 LSM12Q3MHD2 195 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 RABL6Q3YEC7 729 aaPredicted RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 KBTBD12Q3ZCT8 623 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 PITRM1Q5JRX3 1037 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 C10orf76Q5T2E6 689 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 SFMBT2Q5VUG0 894 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 C16orf54Q6UWD8 224 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 MMS22LQ6ZRQ5 1243 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 BTN2A1Q7KYR7 527 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CATSPER4Q7RTX7 472 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 KRT26Q7Z3Y9 468 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 ZNF354CQ86Y25 554 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 AFAP1L2Q8N4X5 818 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 ANKRD42Q8N9B4 389 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CLRN3Q8NCR9 226 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 SPATA18Q8TC71 538 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 BICD2Q8TD16 824 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CACTINQ8WUQ7 758 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 ARHGEF2Q92974 986 aaKnown RBP5.65□□□□□ -1.5
VPS35-205ENST00000563984 SCLT1Q96NL6 688 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 MOGAT1Q96PD6 335 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 DBNDD1Q9H9R9 158 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 PLEKHA5Q9HAU0 1116 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CYP4F11Q9HBI6 524 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 TAGLN3Q9UI15 199 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 CDY2AQ9Y6F7 541 aa5.65□□□□□ -1.5
VPS35-205ENST00000563984 TRIM64A6NGJ6 449 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 TRIM64BA6NI03 449 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 SPTLC2O15270 562 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 HOXA3O43365 443 aaPredicted RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 FGFR1OPO95684 399 aaKnown RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 LTA4HP09960 611 aaKnown RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 GNAT2P19087 354 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 YY1P25490 414 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 DDIT3P35638 169 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 MAP2K2P36507 400 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 RPS6KA3P51812 740 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 PLIN5Q00G26 463 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 RASA2Q15283 850 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 UGT8Q16880 541 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 ERAP2Q6P179 960 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CYP26C1Q6V0L0 522 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 Q6ZRM9 215 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 HTR3DQ70Z44 454 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 RUFY3Q7L099 469 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 FAM114A1Q8IWE2 563 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 SPICE1Q8N0Z3 855 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CCAR2Q8N163 923 aaKnown RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 DCLK2Q8N568 766 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS35-205ENST00000563984 ANKRD20A12PQ8NF67 263 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 MDGA1Q8NFP4 955 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 ERMNQ8TAM6 284 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 ST8SIA2Q92186 375 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CHFRQ96EP1 664 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CFAP36Q96G28 342 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CAPS2Q9BXY5 557 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CCDC68Q9H2F9 335 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 UPF2Q9HAU5 1272 aaKnown RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 TOPORSQ9NS56 1045 aaPredicted RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 PSD3Q9NYI0 1048 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 CEP72Q9P209 647 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 FBXL5Q9UKA1 691 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 NOSIPQ9Y314 301 aaKnown RBP5.64□□□□□ -1.51
VPS35-205ENST00000563984 ZBED9Q6R2W3 1325 aa5.64□□□□□ -1.51
VPS35-205ENST00000563984 M0QX08 132 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 SNX2O60749 519 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 PEX11BO96011 259 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 IFIT2P09913 472 aaKnown RBP5.63□□□□□ -1.51
VPS35-205ENST00000563984 HSPA1AP0DMV8 641 aaKnown RBP5.63□□□□□ -1.51
VPS35-205ENST00000563984 HSPA1BP0DMV9 641 aaKnown RBP5.63□□□□□ -1.51
VPS35-205ENST00000563984 KRT13P13646 458 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 SLC5A1P13866 664 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 BTF3P20290 206 aaKnown RBP5.63□□□□□ -1.51
VPS35-205ENST00000563984 CD9P21926 228 aa5.63□□□□□ -1.51
VPS35-205ENST00000563984 MATR3P43243 847 aaKnown RBP eCLIP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms