RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PABPC1LQ4VXU2 614 aaKnown RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 WSCD1Q658N2 575 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 LMBRD2Q68DH5 695 aaPredicted RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 GET4Q7L5D6 327 aaPredicted RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 UBALD2Q8IYN6 164 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 TOP6BLQ8N6T0 577 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 OR5B17Q8NGF7 314 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 CXorf38Q8TB03 319 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 C2orf15Q8WU43 125 aaKnown RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 HPDLQ96IR7 371 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 ZNF512Q96ME7 567 aaPredicted RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 AVENQ9NQS1 362 aaPredicted RBP14.4□□□□□ -0.1
CLK3-213ENST00000563842 EPS15L1Q9UBC2 864 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 LIMD1Q9UGP4 676 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 SIX4Q9UIU6 781 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 SNX9Q9Y5X1 595 aa14.4□□□□□ -0.1
CLK3-213ENST00000563842 MAPK13O15264 365 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 PHACTR2O75167 634 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 SEC24AO95486 1093 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 PPP1R2P41236 205 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 ALDH1A3P47895 512 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 TUFMP49411 452 aaKnown RBP14.39□□□□□ -0.11
CLK3-213ENST00000563842 EPHB3P54753 998 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 CYP4A22Q5TCH4 519 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 ZNF658Q5TYW1 1059 aaPredicted RBP14.39□□□□□ -0.11
CLK3-213ENST00000563842 CEP135Q66GS9 1140 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 PDCL2Q8N4E4 241 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 LEMD2Q8NC56 503 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 FEZF2Q8TBJ5 459 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 TMC2Q8TDI7 906 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 PARD3BQ8TEW8 1205 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 ACBD6Q9BR61 282 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 ZCWPW1Q9H0M4 648 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 DNMT3BQ9UBC3 853 aaKnown RBP14.39□□□□□ -0.11
CLK3-213ENST00000563842 MAPK8IP1Q9UQF2 711 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 PTPRJQ12913 1337 aa14.39□□□□□ -0.11
CLK3-213ENST00000563842 ZNF638Q14966 1978 aaKnown RBP14.38□□□□□ -0.11
CLK3-213ENST00000563842 MTMR11A4FU01 709 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 PRR33A8MZF0 331 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 RHOP08100 348 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 FAM163BP0C2L3 166 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 OR4Q2P0C623 313 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 LAMP2P13473 410 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 NR2F2P24468 414 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 PCSK1P29120 753 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 ATICP31939 592 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 ENPEPQ07075 957 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 SIGLEC14Q08ET2 396 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 TWF1Q12792 350 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 DUSP4Q13115 394 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 STIM1Q13586 685 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 NFE2Q16621 373 aaPredicted RBP14.38□□□□□ -0.11
CLK3-213ENST00000563842 EDRF1Q3B7T1 1238 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 SLC39A12Q504Y0 691 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 COBLL1Q53SF7 1204 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 CENPPQ6IPU0 288 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 ADGRF2Q8IZF7 708 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 SPATA20Q8TB22 786 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 SPPL2BQ8TCT7 592 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 SYAP1Q96A49 352 aaPredicted RBP14.38□□□□□ -0.11
CLK3-213ENST00000563842 PGLYRP2Q96PD5 576 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 MYADMQ96S97 322 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 CDH7Q9ULB5 785 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 L1RE1Q9UN81 338 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 MRPS23Q9Y3D9 190 aaKnown RBP14.38□□□□□ -0.11
CLK3-213ENST00000563842 YIPF1Q9Y548 306 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 ASB3Q9Y575 518 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 PCDHA5Q9Y5H7 936 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 MYH10P35580 1976 aa14.38□□□□□ -0.11
CLK3-213ENST00000563842 DENND4CQ5VZ89 1909 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 IKBKBO14920 756 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 MICAL2O94851 1124 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 STAU1O95793 577 aaKnown RBP14.37□□□□□ -0.11
CLK3-213ENST00000563842 KRT13P13646 458 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 PSMC2P35998 433 aaKnown RBP14.37□□□□□ -0.11
CLK3-213ENST00000563842 UBE2HP62256 183 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 TNNC1P63316 161 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 CLDN10P78369 228 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 NTHL1P78549 312 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 ADAM9Q13443 819 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 BIRC3Q13489 604 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 TDGQ13569 410 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 TRIM67Q6ZTA4 783 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 INTS8Q75QN2 995 aaKnown RBP14.37□□□□□ -0.11
CLK3-213ENST00000563842 PDZD4Q76G19 769 aaPredicted RBP14.37□□□□□ -0.11
CLK3-213ENST00000563842 ITIH5Q86UX2 942 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 OR10T2Q8NGX3 314 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 MMS19Q96T76 1030 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 TSG101Q99816 390 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 CORO1BQ9BR76 489 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 LRFN3Q9BTN0 628 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 KCNK12Q9HB15 430 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 HCFC1R1Q9NWW0 138 aa14.37□□□□□ -0.11
CLK3-213ENST00000563842 DDX43Q9NXZ2 648 aaKnown RBP14.37□□□□□ -0.11
CLK3-213ENST00000563842 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CLK3-213ENST00000563842 CETN3O15182 167 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 N4BP1O75113 896 aaKnown RBP14.36□□□□□ -0.11
CLK3-213ENST00000563842 FGF19O95750 216 aa14.36□□□□□ -0.11
CLK3-213ENST00000563842 CST3P01034 146 aaPredicted RBP14.36□□□□□ -0.11
CLK3-213ENST00000563842 ASGR2P07307 311 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms