RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RTP3Q9BQQ7 232 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 HERC2P3Q9BVR0 1158 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 MSRAQ9UJ68 235 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 CNTN6Q9UQ52 1028 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 RWDD3Q9Y3V2 267 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 PCDHB4Q9Y5E5 795 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 RANBP2P49792 3224 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 TRIOBPQ9H2D6 2365 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 COL4A4P53420 1690 aaPredicted RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 C5orf67F2Z3F1 127 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 GABRDO14764 452 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 SOD2P04179 222 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ZNF132P52740 706 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 NDST1P52848 882 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ERVK-21P61565 698 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 YWHAEP62258 255 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 SMAD3P84022 425 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ZBED6P86452 979 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 PLCB3Q01970 1234 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ORC1Q13415 861 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 RTP2Q5QGT7 225 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 DDX53Q86TM3 631 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 FAM71AQ8IYT1 594 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 RBBP8NLQ8NC74 664 aaPredicted RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 SPATA18Q8TC71 538 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 TGS1Q96RS0 853 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 PLVAPQ9BX97 442 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ELOVL4Q9GZR5 314 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 FAM124BQ9H5Z6 455 aaPredicted RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 DSEQ9UL01 958 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 MTUS1Q9ULD2 1270 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 MYO6Q9UM54 1294 aa17.72■□□□□ 0.43
VPS4A-202ENST00000562754 BARX2Q9UMQ3 279 aaPredicted RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 COLQQ9Y215 455 aaPredicted RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 LUC7L2Q9Y383 392 aaKnown RBP17.72■□□□□ 0.43
VPS4A-202ENST00000562754 ATG2AQ2TAZ0 1938 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 ARHGEF37A1IGU5 675 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 CALCAP01258 141 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 FAM163BP0C2L3 166 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 KRT5P13647 590 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 DNAJB2P25686 324 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 LMO2P25791 158 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 KRT9P35527 623 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 SOX5P35711 763 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 ADKP55263 362 aaKnown RBP17.71■□□□□ 0.43
VPS4A-202ENST00000562754 VARS2Q5ST30 1063 aaKnown RBP17.71■□□□□ 0.43
VPS4A-202ENST00000562754 OVOS1Q6IE37 1185 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 TMEM270Q6UE05 265 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 CEP57Q86XR8 500 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 TC2NQ8N9U0 490 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 OR6B3Q8NGW1 331 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 ANP32BQ92688 251 aaKnown RBP17.71■□□□□ 0.43
VPS4A-202ENST00000562754 SAMD11Q96NU1 681 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 TTPALQ9BTX7 342 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 SNX25Q9H3E2 840 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 CHST7Q9NS84 486 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 IMPACTQ9P2X3 320 aa17.71■□□□□ 0.43
VPS4A-202ENST00000562754 A0A1W2PPC1 479 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 AKR1B15C9JRZ8 316 aaPredicted RBP17.7■□□□□ 0.42
VPS4A-202ENST00000562754 GFPT2O94808 682 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 OAZ2O95190 189 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 TPM1P09493 284 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 ACAT1P24752 427 aaKnown RBP17.7■□□□□ 0.42
VPS4A-202ENST00000562754 USP8P40818 1118 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 STAT1P42224 750 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 RAD23BP54727 409 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 YWHAHQ04917 246 aaPredicted RBP17.7■□□□□ 0.42
VPS4A-202ENST00000562754 MRPL58Q14197 206 aaKnown RBP17.7■□□□□ 0.42
VPS4A-202ENST00000562754 ARID5BQ14865 1188 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 CCDC142Q17RM4 750 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 USP41Q3LFD5 358 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 ZNF394Q53GI3 561 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 KIAA0319Q5VV43 1072 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 PPP2R2DQ66LE6 453 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 UNC93AQ86WB7 457 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 METTL23Q86XA0 190 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 TTC39CQ8N584 583 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 OR10T2Q8NGX3 314 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 DNAJC7Q99615 494 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 DPEP3Q9H4B8 488 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 ACP6Q9NPH0 428 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 DDX43Q9NXZ2 648 aaKnown RBP17.7■□□□□ 0.42
VPS4A-202ENST00000562754 STXBP5LQ9Y2K9 1186 aa17.7■□□□□ 0.42
VPS4A-202ENST00000562754 A8MXQ7 604 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 CYP26A1O43174 497 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 RB1P06400 928 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 PDGFRBP09619 1106 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 DNAJB1P25685 340 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 CLCN1P35523 988 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 GNL1P36915 607 aaPredicted RBP17.69■□□□□ 0.42
VPS4A-202ENST00000562754 LHX1P48742 406 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 GLUD2P49448 558 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 KRT17Q04695 432 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 SFMBT2Q5VUG0 894 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 PRSS55Q6UWB4 352 aaPredicted RBP17.69■□□□□ 0.42
VPS4A-202ENST00000562754 CNGA4Q8IV77 575 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 VPS52Q8N1B4 723 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 SLC4A11Q8NBS3 891 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 FBXO22Q8NEZ5 403 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 ZNF397Q8NF99 534 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms