RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TACC1O75410 805 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 VNN1O95497 513 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 HNRNPA1P09651 372 aaKnown RBP eCLIP13.95□□□□□ -0.18
NEDD8-208ENST00000560427 CPB1P15086 417 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 ATF2P15336 505 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 PCSK1P29120 753 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 GCLMP48507 274 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 MYL6P60660 151 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 MYL7Q01449 175 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 TFF2Q03403 129 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 SOWAHAQ2M3V2 549 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 WDR72Q3MJ13 1102 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 DCAF17Q5H9S7 520 aaPredicted RBP13.95□□□□□ -0.18
NEDD8-208ENST00000560427 ZNF667Q5HYK9 610 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 TJAP1Q5JTD0 557 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 TCERG1LQ5VWI1 586 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 WSCD1Q658N2 575 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 CES5AQ6NT32 575 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 GLYCTKQ8IVS8 523 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 ADGRF2Q8IZF7 708 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 NECTIN4Q96NY8 510 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 S1PR5Q9H228 398 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 ADAM7Q9H2U9 754 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 TMEM63CQ9P1W3 806 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 HSFX1Q9UBD0 423 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 GABRDO14764 452 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 P4HA2O15460 535 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 MBTPS2O43462 519 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 ZMYND10O75800 440 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 LETM1O95202 739 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 ASS1P00966 412 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 PRKCSHP14314 528 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 WARSP23381 471 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 TSPY1Q01534 308 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 CETN1Q12798 172 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 GPR17Q13304 367 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 STX1AQ16623 288 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 TPD52L1Q16890 204 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 SKOR2Q2VWA4 1001 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 PTCRAQ6ISU1 281 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 FAM114A1Q8IWE2 563 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 TCEAL8Q8IYN2 117 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 DCP1BQ8IZD4 617 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 FBXL13Q8NEE6 735 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 C2orf15Q8WU43 125 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 SUSD6Q92537 303 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 RIPOR3Q96MK2 946 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 ACBD6Q9BR61 282 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 SRRTQ9BXP5 876 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 ZCWPW1Q9H0M4 648 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 THAP9Q9H5L6 903 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 FAM124BQ9H5Z6 455 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 DDX43Q9NXZ2 648 aaKnown RBP13.94□□□□□ -0.18
NEDD8-208ENST00000560427 COQ4Q9Y3A0 265 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 COL6A3P12111 3177 aa13.94□□□□□ -0.18
NEDD8-208ENST00000560427 GRXCR2A6NFK2 248 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 HLA-DRAP01903 254 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 C8AP07357 584 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 ELF1P32519 619 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 MTHFRP42898 656 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 SMAD2Q15796 467 aaKnown RBP13.93□□□□□ -0.18
NEDD8-208ENST00000560427 CAVIN1Q6NZI2 390 aaKnown RBP13.93□□□□□ -0.18
NEDD8-208ENST00000560427 GPR149Q86SP6 731 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 TRIM59Q8IWR1 403 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 OR10T2Q8NGX3 314 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 TAS1R2Q8TE23 839 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 MED15Q96RN5 788 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 MMS19Q96T76 1030 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 RTP3Q9BQQ7 232 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 PRKAG3Q9UGI9 489 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 USP15Q9Y4E8 981 aaPredicted RBP13.93□□□□□ -0.18
NEDD8-208ENST00000560427 PLXNA3P51805 1871 aa13.93□□□□□ -0.18
NEDD8-208ENST00000560427 SPTBN5Q9NRC6 3674 aaKnown RBP13.93□□□□□ -0.18
NEDD8-208ENST00000560427 EYSQ5T1H1 3165 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 XYLBO75191 536 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 CLSTN1O94985 981 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 ARPP19P56211 112 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 NOP14P78316 857 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 ADCY1Q08828 1119 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 PLD1Q13393 1074 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 MAPRE1Q15691 268 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 CLUL1Q15846 466 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 NFE2Q16621 373 aaPredicted RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 INTS6LQ5JSJ4 861 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 PPM1LQ5SGD2 360 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 ATAT1Q5SQI0 421 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 RARS2Q5T160 578 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 SCARA3Q6AZY7 606 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 TTC39CQ8N584 583 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 SLC7A14Q8TBB6 771 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 ENOX1Q8TC92 643 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 SPPL2BQ8TCT7 592 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 KBTBD7Q8WVZ9 684 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 CNOT6LQ96LI5 555 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 PRKD2Q9BZL6 878 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 NIF3L1Q9GZT8 377 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 MMRN2Q9H8L6 949 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 ABCB6Q9NP58 842 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 RAB20Q9NX57 234 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms