RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 TRPV5Q9NQA5 729 aa13.57□□□□□ -0.24
SNX1-209ENST00000559961 OLFML3Q9NRN5 406 aa13.57□□□□□ -0.24
SNX1-209ENST00000559961 RBAKQ9NYW8 714 aaPredicted RBP13.57□□□□□ -0.24
SNX1-209ENST00000559961 NDRG2Q9UN36 371 aaKnown RBP13.57□□□□□ -0.24
SNX1-209ENST00000559961 PCDHB5Q9Y5E4 795 aa13.57□□□□□ -0.24
SNX1-209ENST00000559961 R4GN57 208 aa13.57□□□□□ -0.24
SNX1-209ENST00000559961 ANO9A1A5B4 782 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 HEPACAM2A8MVW5 462 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 SPTLC2O15270 562 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 KRT19P08727 400 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 TMEM191BP0C7N4 346 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 GJA1P17302 382 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 GABRR2P28476 465 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 VIPR2P41587 438 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 CCR2P41597 374 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 RBP5P82980 135 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 MYL7Q01449 175 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 MYO1EQ12965 1108 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 LRRC32Q14392 662 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 NFE2Q16621 373 aaPredicted RBP13.56□□□□□ -0.24
SNX1-209ENST00000559961 GPR158Q5T848 1215 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 FAM173BQ6P4H8 233 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 HSCBQ8IWL3 235 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 CSGALNACT2Q8N6G5 542 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 PDILTQ8N807 584 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 IQUBQ8NA54 791 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 ANKRD36BP1Q96IX9 119 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 ZSWIM3Q96MP5 696 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 FIZ1Q96SL8 496 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 ZCWPW1Q9H0M4 648 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 C8orf33Q9H7E9 229 aaPredicted RBP13.56□□□□□ -0.24
SNX1-209ENST00000559961 DLGAP2Q9P1A6 1054 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 AGAP1Q9UPQ3 857 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 PIAS3Q9Y6X2 628 aa13.56□□□□□ -0.24
SNX1-209ENST00000559961 MORC2Q9Y6X9 1032 aaPredicted RBP13.56□□□□□ -0.24
SNX1-209ENST00000559961 PPEF2O14830 753 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 SPTLC1O15269 473 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 CHADO15335 359 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 EXTL3O43909 919 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 LRRN2O75325 713 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 TNNC2P02585 160 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 PLCB2Q00722 1185 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 FOXK2Q01167 660 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 ARHGAP29Q52LW3 1261 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 WSCD1Q658N2 575 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 VITQ6UXI7 678 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 ARID3BQ8IVW6 561 aaPredicted RBP13.55□□□□□ -0.24
SNX1-209ENST00000559961 TMEM86AQ8N2M4 240 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 SHKBP1Q8TBC3 707 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 LRRC15Q8TF66 581 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 RUBCNQ92622 972 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 EXOC4Q96A65 974 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 SAAL1Q96ER3 474 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 USP28Q96RU2 1077 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 FAM126AQ9BYI3 521 aaPredicted RBP13.55□□□□□ -0.24
SNX1-209ENST00000559961 BACH2Q9BYV9 841 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 KIAA1586Q9HCI6 787 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 ABI2Q9NYB9 513 aaPredicted RBP13.55□□□□□ -0.24
SNX1-209ENST00000559961 ITGA11Q9UKX5 1188 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 RAB23Q9ULC3 237 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 MTMR6Q9Y217 621 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 PCDHGA2Q9Y5H1 932 aa13.55□□□□□ -0.24
SNX1-209ENST00000559961 ZNF233A6NK53 670 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 TISP43B9A030 160 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 PPP6R2O75170 966 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 FCARP24071 287 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 TARSP26639 723 aaKnown RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 PCSK1P29120 753 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 POLR2BP30876 1174 aaKnown RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 AVPR1AP37288 418 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 LHX1P48742 406 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 NASPP49321 788 aaPredicted RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 MLLT6P55198 1093 aaPredicted RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 RPL10AP62906 217 aaKnown RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 ASIC1P78348 528 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 AMPD2Q01433 879 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 BFSP1Q12934 665 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 CC2D1AQ6P1N0 951 aaPredicted RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 BRSK2Q8IWQ3 736 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 GPD1LQ8N335 351 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 CLDN23Q96B33 292 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 DNAJC19Q96DA6 116 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 TNMDQ9H2S6 317 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 PCIF1Q9H4Z3 704 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 TASP1Q9H6P5 420 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 LMAN1LQ9HAT1 526 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 ZSCAN32Q9NX65 697 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 OBP2AQ9NY56 170 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 FAM13BQ9NYF5 915 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 NCDNQ9UBB6 729 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 UXTQ9UBK9 157 aaPredicted RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 MTF2Q9Y483 593 aaPredicted RBP13.54□□□□□ -0.24
SNX1-209ENST00000559961 WDFY4Q6ZS81 3184 aa13.54□□□□□ -0.24
SNX1-209ENST00000559961 GOLGA8IPA6NC78 632 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 GOLGA8JA6NMD2 632 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 CUTAO60888 179 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 PRPF40AO75400 957 aaKnown RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 PPP1R37O75864 691 aa13.53□□□□□ -0.24
SNX1-209ENST00000559961 PRPF6O94906 941 aaKnown RBP13.53□□□□□ -0.24
SNX1-209ENST00000559961 CLSTN1O94985 981 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms