RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ZFATQ9P243 1243 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 CNTN6Q9UQ52 1028 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TM9SF1O15321 606 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TLR3O15455 904 aaKnown RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 EXTL3O43909 919 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TBC1D12O60347 775 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 SPAG7O75391 227 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 ITGAVP06756 1048 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 ACADSP16219 412 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TBXAS1P24557 533 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 TARSP26639 723 aaKnown RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 PKN2Q16513 984 aaKnown RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 SLC39A4Q6P5W5 647 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 LONP2Q86WA8 852 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 MCPH1Q8NEM0 835 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 ASAP3Q8TDY4 903 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 FAM151AQ8WW52 585 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 SLITRK1Q96PX8 696 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 NUDCD1Q96RS6 583 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 DDX56Q9NY93 547 aaKnown RBP17.19■□□□□ 0.34
SHMT2-232ENST00000557487 HAO1Q9UJM8 370 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 ZNF148Q9UQR1 794 aa17.19■□□□□ 0.34
SHMT2-232ENST00000557487 DICER1Q9UPY3 1922 aaKnown RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 POC1B-GALNT4F8VUJ3 575 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 T-ENOLP0DO92 83 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 PECAM1P16284 738 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 MARK3P27448 753 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 ARSEP51690 589 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 RAD23BP54727 409 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 VCPP55072 806 aaKnown RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 GEMIN4P57678 1058 aaKnown RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 TAP1Q03518 808 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 SPP2Q13103 211 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 KLHL38Q2WGJ6 581 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 RNASEH2BQ5TBB1 312 aaKnown RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 XRRA1Q6P2D8 792 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 KIRREL3Q8IZU9 778 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 ZNF75CPQ92670 426 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-232ENST00000557487 C11orf70Q9BRQ4 267 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 VPS37BQ9H9H4 285 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 COL20A1Q9P218 1284 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 ANKFY1Q9P2R3 1169 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 ZFP69BQ9UJL9 534 aa17.18■□□□□ 0.34
SHMT2-232ENST00000557487 HNRNPDLO14979 420 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 RPA3P35244 121 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 UGCGQ16739 394 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 NLRP9Q7RTR0 991 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 CLEC4DQ8WXI8 215 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 FNBP1Q96RU3 617 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 VPS11Q9H270 941 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 STOML1Q9UBI4 398 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 EFR3BQ9Y2G0 817 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 FZD9O00144 591 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 HLA-DRAP01903 254 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 CALB1P05937 261 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 CD58P19256 250 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 ACO1P21399 889 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 CAP2P40123 477 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 MRPS9P82933 396 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 GPS1Q13098 491 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 CUL2Q13617 745 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 LBRQ14739 615 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 ZRSR2Q15696 482 aaKnown RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 SGSM1Q2NKQ1 1148 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 OTOAQ7RTW8 1153 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 ATP11CQ8NB49 1132 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 IL31RAQ8NI17 732 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 PRMT6Q96LA8 375 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 PI4K2AQ9BTU6 479 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 OSBPL1AQ9BXW6 950 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 NKX1-2Q9UD57 310 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-232ENST00000557487 DNPEPQ9ULA0 475 aa17.17■□□□□ 0.34
SHMT2-232ENST00000557487 GLTPD2A6NH11 291 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 CCDC22O60826 627 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 C4BPAP04003 597 aaKnown RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 KRT1P04264 644 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 GNA15P30679 374 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 DSG3P32926 999 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 PIK3CAP42336 1068 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SSR1P43307 286 aaKnown RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 ADCY1Q08828 1119 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 OASLQ15646 514 aaKnown RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SLC1A5Q15758 541 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SEPT7Q16181 437 aaKnown RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 APBB1IPQ7Z5R6 666 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SYTL5Q8TDW5 730 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-232ENST00000557487 FAM213AQ9BRX8 229 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 DHRS4Q9BTZ2 278 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SLCO1B3Q9NPD5 702 aa17.16■□□□□ 0.34
SHMT2-232ENST00000557487 SCN9AQ15858 1988 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 DGAT1O75907 488 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 LSM8O95777 96 aaKnown RBP17.15■□□□□ 0.34
SHMT2-232ENST00000557487 TFDP3Q5H9I0 405 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 LVRNQ6Q4G3 990 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 SPOCD1Q6ZMY3 1216 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 RBBP8NLQ8NC74 664 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-232ENST00000557487 JDP2Q8WYK2 163 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 ATP6V0A1Q93050 837 aa17.15■□□□□ 0.34
SHMT2-232ENST00000557487 AGBL1Q96MI9 1066 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms