RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MMRN2Q9H8L6 949 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 METTL14Q9HCE5 456 aaKnown RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 ZDHHC7Q9NXF8 308 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 USP15Q9Y4E8 981 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 TTC28Q96AY4 2481 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 RFPL2O75678 378 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 ZMYND10O75800 440 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 ABLIM3O94929 683 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 VNN1O95497 513 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 FGFR1OPO95684 399 aaKnown RBP14.58□□□□□ -0.08
SHMT2-228ENST00000557302 HLA-DRAP01903 254 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 C8AP07357 584 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 OR4Q2P0C623 313 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 IL9P15248 144 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 ATF2P15336 505 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 ELF1P32519 619 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 PIK3CAP42336 1068 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 TNNC1P63316 161 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 SMAD2Q15796 467 aaKnown RBP14.58□□□□□ -0.08
SHMT2-228ENST00000557302 WDR72Q3MJ13 1102 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 TCERG1LQ5VWI1 586 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 KRT39Q6A163 491 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 CCDC149Q6ZUS6 474 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 DPH6Q7L8W6 267 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 FRMD5Q7Z6J6 570 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 ADGRF2Q8IZF7 708 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 SUSD6Q92537 303 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 MMS19Q96T76 1030 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 SRRTQ9BXP5 876 aaKnown RBP14.58□□□□□ -0.08
SHMT2-228ENST00000557302 XYLT2Q9H1B5 865 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 VRTNQ9H8Y1 702 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 TMEM8AQ9HCN3 771 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 AFF4Q9UHB7 1163 aaKnown RBP14.58□□□□□ -0.08
SHMT2-228ENST00000557302 MAFFQ9ULX9 164 aa14.58□□□□□ -0.08
SHMT2-228ENST00000557302 CCDC195A0A1B0GUA6 201 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 PRRG1O14668 218 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 GNA14O95837 355 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 PTMSP20962 102 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 MTHFRP42898 656 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 LHX1P48742 406 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 MXI1P50539 228 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 MYL7Q01449 175 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 TSPY1Q01534 308 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 GPR17Q13304 367 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 SOWAHAQ2M3V2 549 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 SGSM1Q2NKQ1 1148 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 UVSSAQ2YD98 709 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 ZNF667Q5HYK9 610 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 PPM1LQ5SGD2 360 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 ATAT1Q5SQI0 421 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 RTL10Q7L3V2 364 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 LIMS2Q7Z4I7 341 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 GPR149Q86SP6 731 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 OR10T2Q8NGX3 314 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 SLC7A14Q8TBB6 771 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 TAF4BQ92750 862 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 RIPOR3Q96MK2 946 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 NECTIN4Q96NY8 510 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 RTP3Q9BQQ7 232 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 IMPG2Q9BZV3 1241 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 DDX43Q9NXZ2 648 aaKnown RBP14.57□□□□□ -0.08
SHMT2-228ENST00000557302 NXF1Q9UBU9 619 aaKnown RBP14.57□□□□□ -0.08
SHMT2-228ENST00000557302 PLXNA3P51805 1871 aa14.57□□□□□ -0.08
SHMT2-228ENST00000557302 HNRNPA1P09651 372 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 WEE2P0C1S8 567 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 P4HA1P13674 534 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 WARSP23381 471 aaKnown RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 ERCC5P28715 1186 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 PCSK1P29120 753 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 ADCY1Q08828 1119 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CBX2Q14781 532 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TPD52L1Q16890 204 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 SLC39A12Q504Y0 691 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CT47A1Q5JQC4 288 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 SASS6Q6UVJ0 657 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CYP26C1Q6V0L0 522 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 RNF19BQ6ZMZ0 732 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 OSTM1Q86WC4 334 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TCEAL8Q8IYN2 117 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 DCP1BQ8IZD4 617 aaKnown RBP14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CCDC150Q8NCX0 1101 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TAS1R2Q8TE23 839 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 KBTBD7Q8WVZ9 684 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 SLC35C1Q96A29 364 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TMEM209Q96SK2 561 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 ACBD6Q9BR61 282 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 RHOBTB2Q9BYZ6 727 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 PRKD2Q9BZL6 878 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 ZCWPW1Q9H0M4 648 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CYP4F11Q9HBI6 524 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TMEM63CQ9P1W3 806 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 CDH22Q9UJ99 828 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 TSC2P49815 1807 aa14.56□□□□□ -0.08
SHMT2-228ENST00000557302 GABRDO14764 452 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 XYLBO75191 536 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 TACC1O75410 805 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 PAPLNO95428 1278 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 ASS1P00966 412 aaKnown RBP14.55□□□□□ -0.08
SHMT2-228ENST00000557302 FAM163BP0C2L3 166 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 CCDC192P0DO97 292 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms