RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 CENPPQ6IPU0 288 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 UBALD2Q8IYN6 164 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 ING5Q8WYH8 240 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 MFSD14AQ96MC6 490 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 CORO1BQ9BR76 489 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 GDAP2Q9NXN4 497 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 SLC27A5Q9Y2P5 690 aa22.07■■□□□ 1.12
VTI1B-205ENST00000555543 PDXKO00764 312 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 NR3C1P04150 777 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 TNNI1P19237 187 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 CASP4P49662 377 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 FAM160A1Q05DH4 1040 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 HTR4Q13639 388 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 POTEHQ6S545 545 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 TRAPPC11Q7Z392 1133 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 LRRTM3Q86VH5 581 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 SLC9A9Q8IVB4 645 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 NPAS3Q8IXF0 933 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 ZNF516Q92618 1163 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 CCDC47Q96A33 483 aaKnown RBP22.06■■□□□ 1.12
VTI1B-205ENST00000555543 TCEAL4Q96EI5 215 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 FNBP1Q96RU3 617 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 IGSF9Q9P2J2 1179 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 CIZ1Q9ULV3 898 aaPredicted RBP22.06■■□□□ 1.12
VTI1B-205ENST00000555543 MAPK8IP1Q9UQF2 711 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 SNX9Q9Y5X1 595 aa22.06■■□□□ 1.12
VTI1B-205ENST00000555543 ANHXE9PGG2 379 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 NARSO43776 548 aaKnown RBP22.05■■□□□ 1.12
VTI1B-205ENST00000555543 SOAT2O75908 522 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 CEBPBP17676 345 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 PTPN2P17706 415 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 CCR2P41597 374 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 TDGQ13569 410 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 PRSS36Q5K4E3 855 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 OSTM1Q86WC4 334 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 HS6ST3Q8IZP7 471 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 TMEM174Q8WUU8 243 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 HPDLQ96IR7 371 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 DNAJC25Q9H1X3 360 aa22.05■■□□□ 1.12
VTI1B-205ENST00000555543 AVENQ9NQS1 362 aaPredicted RBP22.05■■□□□ 1.12
VTI1B-205ENST00000555543 MRPS23Q9Y3D9 190 aaKnown RBP22.05■■□□□ 1.12
VTI1B-205ENST00000555543 HCRTO43612 131 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 HUS1O60921 280 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 PRPF40AO75400 957 aaKnown RBP22.04■■□□□ 1.12
VTI1B-205ENST00000555543 PDGFBP01127 241 aaPredicted RBP22.04■■□□□ 1.12
VTI1B-205ENST00000555543 SOWAHAQ2M3V2 549 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 BMP8AQ7Z5Y6 402 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 SMYD4Q8IYR2 804 aaPredicted RBP22.04■■□□□ 1.12
VTI1B-205ENST00000555543 THEM5Q8N1Q8 247 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 ERCC4Q92889 916 aaPredicted RBP22.04■■□□□ 1.12
VTI1B-205ENST00000555543 TMLHEQ9NVH6 421 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 DUSP12Q9UNI6 340 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 TRAF3IP3Q9Y228 551 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 ZFP37Q9Y6Q3 630 aaPredicted RBP22.04■■□□□ 1.12
VTI1B-205ENST00000555543 NUMBLQ9Y6R0 609 aa22.04■■□□□ 1.12
VTI1B-205ENST00000555543 ZDBF2Q9HCK1 2354 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 LRRIQ3A6PVS8 624 aaPredicted RBP22.03■■□□□ 1.12
VTI1B-205ENST00000555543 CST3P01034 146 aaPredicted RBP22.03■■□□□ 1.12
VTI1B-205ENST00000555543 ACAT1P24752 427 aaKnown RBP22.03■■□□□ 1.12
VTI1B-205ENST00000555543 MYO1EQ12965 1108 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 CCDC142Q17RM4 750 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 PARM1Q6UWI2 310 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 LIMS2Q7Z4I7 341 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 ADGRF2Q8IZF7 708 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 TMEM86AQ8N2M4 240 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 ELMOD1Q8N336 334 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 GUF1Q8N442 669 aaKnown RBP22.03■■□□□ 1.12
VTI1B-205ENST00000555543 SLC44A3Q8N4M1 653 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 TOP6BLQ8N6T0 577 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 PARD3BQ8TEW8 1205 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 FGF14Q92915 247 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 PBXIP1Q96AQ6 731 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 ZNF318Q5VUA4 2279 aa22.03■■□□□ 1.12
VTI1B-205ENST00000555543 MOSPD3O75425 235 aa22.02■■□□□ 1.12
VTI1B-205ENST00000555543 KBTBD7Q8WVZ9 684 aa22.02■■□□□ 1.12
VTI1B-205ENST00000555543 CCDC34Q96HJ3 373 aa22.02■■□□□ 1.12
VTI1B-205ENST00000555543 ZNF512Q96ME7 567 aaPredicted RBP22.02■■□□□ 1.12
VTI1B-205ENST00000555543 RPP25Q9BUL9 199 aaKnown RBP22.02■■□□□ 1.12
VTI1B-205ENST00000555543 LRRC3Q9BY71 257 aa22.02■■□□□ 1.12
VTI1B-205ENST00000555543 DDX43Q9NXZ2 648 aaKnown RBP22.02■■□□□ 1.12
VTI1B-205ENST00000555543 R3HCC1Q9Y3T6 440 aaKnown RBP22.02■■□□□ 1.12
VTI1B-205ENST00000555543 WDFY4Q6ZS81 3184 aa22.02■■□□□ 1.12
VTI1B-205ENST00000555543 GABRDO14764 452 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 CALUO43852 315 aaPredicted RBP22.01■■□□□ 1.11
VTI1B-205ENST00000555543 GADD45BO75293 160 aaPredicted RBP22.01■■□□□ 1.11
VTI1B-205ENST00000555543 KIF20AO95235 890 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 ATF6P18850 670 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 EPHA5P54756 1037 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 DLG4P78352 724 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 CLDN10P78369 228 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 PLD1Q13393 1074 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 ZCWPW2Q504Y3 356 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 TDRD10Q5VZ19 366 aaKnown RBP22.01■■□□□ 1.11
VTI1B-205ENST00000555543 IQCEQ6IPM2 695 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 PDZD4Q76G19 769 aaPredicted RBP22.01■■□□□ 1.11
VTI1B-205ENST00000555543 TMC8Q8IU68 726 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 NXPE3Q969Y0 559 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 MCRS1Q96EZ8 462 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 PKMYT1Q99640 499 aa22.01■■□□□ 1.11
VTI1B-205ENST00000555543 SEPT5Q99719 369 aaPredicted RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms