RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TOP6BLQ8N6T0 577 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 KIAA0895Q8NCT3 520 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 SPPL2BQ8TCT7 592 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 FGF14Q92915 247 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 FAM122AQ96E09 287 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 ZNF512Q96ME7 567 aaPredicted RBP17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 LRRC3Q9BY71 257 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 CRISPLD1Q9H336 500 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 SLC39A2Q9NP94 309 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 ASAH2Q9NR71 780 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 EXOC1Q9NV70 894 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 AGAP1Q9UPQ3 857 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 TCHHQ07283 1943 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PTPRJQ12913 1337 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 NARSO43776 548 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PDGFBP01127 241 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 TUFMP49411 452 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 EPHB3P54753 998 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 VCPP55072 806 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 CYP24A1Q07973 514 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 STK4Q13043 487 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 DUSP4Q13115 394 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 CYP4A22Q5TCH4 519 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 ASTLQ6HA08 431 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PARM1Q6UWI2 310 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PDZD4Q76G19 769 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 TMC8Q8IU68 726 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PDCL2Q8N4E4 241 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 CSGALNACT2Q8N6G5 542 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 PSMG2Q969U7 264 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 CHAMP1Q96JM3 812 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 CORO1BQ9BR76 489 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 DNAJC25Q9H1X3 360 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 TRPV4Q9HBA0 871 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 DMAC2Q9NW81 257 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 L1RE1Q9UN81 338 aa17.27■□□□□ 0.36
CCDC88C-209ENST00000554872 GABRDO14764 452 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 MOSPD3O75425 235 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 RHOBTB3O94955 611 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 FGF19O95750 216 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 STAU1O95793 577 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 TNNC2P02585 160 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 CEBPBP17676 345 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 CCR2P41597 374 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 ALDH1A3P47895 512 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 CLDN10P78369 228 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 MYO1EQ12965 1108 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 KMT5BQ4FZB7 885 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 CWF19L1Q69YN2 538 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 PHLDB3Q6NSJ2 640 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 NELFCDQ8IXH7 590 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 DCP1BQ8IZD4 617 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 ATAD1Q8NBU5 361 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 OR5B17Q8NGF7 314 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 ELSPBP1Q96BH3 223 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 PGLYRP2Q96PD5 576 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 TMEM209Q96SK2 561 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 CGRRF1Q99675 332 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 ACBD6Q9BR61 282 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 GPR88Q9GZN0 384 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 GZF1Q9H116 711 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 KCTD10Q9H3F6 313 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 ABCB6Q9NP58 842 aa17.26■□□□□ 0.35
CCDC88C-209ENST00000554872 PDXKO00764 312 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 HUS1O60921 280 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 RPN1P04843 607 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 FAM163BP0C2L3 166 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 NPR3P17342 541 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 FCARP24071 287 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 LHX1P48742 406 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 PTPN5P54829 565 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 DPYDQ12882 1025 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 KCNB1Q14721 858 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 NFE2Q16621 373 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 NFIL3Q16649 462 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 SLC39A12Q504Y0 691 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 KRBA2Q6ZNG9 492 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 ITIH5Q86UX2 942 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 FSIP1Q8NA03 581 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 ASB16Q96NS5 453 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 PKMYT1Q99640 499 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 IRF2BPLQ9H1B7 796 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 FBXL21Q9UKT6 434 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 PIEZO1Q92508 2521 aa17.25■□□□□ 0.35
CCDC88C-209ENST00000554872 KRBA1A5PL33 1030 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 CLIC2O15247 247 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 KIF20AO95235 890 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 AOC1P19801 751 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 CYP2J2P51589 502 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 AP3M2P53677 418 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 TSPY1Q01534 308 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 PFKPQ01813 784 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 BFSP1Q12934 665 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 IER5LQ5T953 404 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 POTEHQ6S545 545 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 TRAPPC11Q7Z392 1133 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 LRRTM3Q86VH5 581 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 SIX5Q8N196 739 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 TMEM105Q8N8V8 129 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 PRSS33Q8NF86 280 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms