RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SQORQ9Y6N5 450 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 MYO7AQ13402 2215 aa8.16□□□□□ -1.1
LIMA1-216ENST00000552909 LRRD1A4D1F6 860 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 PSMA7O14818 248 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 SLC26A4O43511 780 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 BUB1O43683 1085 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 TLL1O43897 1013 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 MYL1P05976 194 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 PLA2G4BP0C869 781 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 SRGAP2CP0DJJ0 459 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 MYBP10242 640 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 DARSP14868 501 aaKnown RBP8.15□□□□□ -1.1
LIMA1-216ENST00000552909 HNRNPH3P31942 346 aaKnown RBP8.15□□□□□ -1.1
LIMA1-216ENST00000552909 EIF4A3P38919 411 aaKnown RBP8.15□□□□□ -1.1
LIMA1-216ENST00000552909 PMS1P54277 932 aaKnown RBP8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ASIC1P78348 528 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 KRT71Q3SY84 523 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF697Q5TEC3 545 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 PIGWQ7Z7B1 504 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ERICH1Q86X53 443 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 FAM114A1Q8IWE2 563 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 USP38Q8NB14 1042 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ZFAND2BQ8WV99 257 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 NAF1Q96HR8 494 aaKnown RBP8.15□□□□□ -1.1
LIMA1-216ENST00000552909 GUCD1Q96NT3 240 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 NACC1Q96RE7 527 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ZBED2Q9BTP6 218 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 MINDY3Q9H8M7 445 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 SLC28A3Q9HAS3 691 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 MSRAQ9UJ68 235 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 PCDHA11Q9Y5I1 949 aa8.15□□□□□ -1.1
LIMA1-216ENST00000552909 ABLIM1O14639 778 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 KLRC4O43908 158 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 EFCAB14O75071 495 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 AMHP03971 560 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 ECHS1P30084 290 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 RFC5P40937 340 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 DNA2P51530 1060 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 CCNG1P51959 295 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 KCNJ2P63252 427 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 MXRA7P84157 204 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 LAMTOR4Q0VGL1 99 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 KLHL7Q8IXQ5 586 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 CRIPAKQ8N1N5 446 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 GALNT15Q8N3T1 639 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 CSGALNACT2Q8N6G5 542 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 B4GALNT2Q8NHY0 566 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 DDX12PQ92771 950 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 EZH1Q92800 747 aaPredicted RBP8.15□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF317Q96PQ6 595 aaPredicted RBP8.15□□□□□ -1.11
LIMA1-216ENST00000552909 ADAM2Q99965 735 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC27Q9C0I9 530 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 TSPYL2Q9H2G4 693 aaPredicted RBP8.15□□□□□ -1.11
LIMA1-216ENST00000552909 BHMT2Q9H2M3 363 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 SALL4Q9UJQ4 1053 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 FBXL5Q9UKA1 691 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 COL4A3BPQ9Y5P4 624 aa8.15□□□□□ -1.11
LIMA1-216ENST00000552909 PRRC2BQ5JSZ5 2229 aaKnown RBP8.15□□□□□ -1.11
LIMA1-216ENST00000552909 NPHP3-ACAD11A0A0J9YXS1 232 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 RFXAPO00287 272 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 GPR182O15218 404 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 DGAT1O75907 488 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MMEP08473 750 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MTIF2P46199 727 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF131P52739 623 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 NCALDP61601 193 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ATP11AP98196 1134 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 TAP1Q03518 808 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 RAB30Q15771 203 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PPP2R2DQ66LE6 453 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PIAS4Q8N2W9 510 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MDM1Q8TC05 714 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ASAP3Q8TDY4 903 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PSPC1Q8WXF1 523 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PRCCQ92733 491 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 CNOT6LQ96LI5 555 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ERGIC2Q96RQ1 377 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 CDX2Q99626 313 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 RAD9AQ99638 391 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 NSRP1Q9H0G5 558 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ECT2Q9H8V3 914 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 DBR1Q9UK59 544 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 AGAP1Q9UPQ3 857 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 RPS6KL1Q9Y6S9 549 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 DPPA5A6NC42 116 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 EPOPA6NHQ4 379 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 NPTXRO95502 500 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PYGLP06737 847 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 RARAP10276 462 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ARL2P36404 184 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 GATMP50440 423 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 SLC12A3P55017 1021 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MRPS35P82673 323 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 HTRA4P83105 476 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 DSC3Q14574 896 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 TTI2Q6NXR4 508 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PADI6Q6TGC4 694 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 GPBP1Q86WP2 473 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 LMNTD2Q8IXW0 634 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 SYT2Q8N9I0 419 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms