RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 C2orf40Q9H1Z8 148 aa15.8■□□□□ 0.12
VPS29-209ENST00000551655 CCDC86Q9H6F5 360 aaKnown RBP15.8■□□□□ 0.12
VPS29-209ENST00000551655 THG1LQ9NWX6 298 aaKnown RBP15.8■□□□□ 0.12
VPS29-209ENST00000551655 EVLQ9UI08 416 aaPredicted RBP15.8■□□□□ 0.12
VPS29-209ENST00000551655 ACACAQ13085 2346 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PI4KAP42356 2102 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PTGER3P43115 390 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 ALDH1A3P47895 512 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 LMAN2Q12907 356 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PLD1Q13393 1074 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PTPAQ15257 358 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 USP39Q53GS9 565 aaKnown RBP15.79■□□□□ 0.12
VPS29-209ENST00000551655 ARHGAP15Q53QZ3 475 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 XKR4Q5GH76 650 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PIK3AP1Q6ZUJ8 805 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 TTC30AQ86WT1 665 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 TMEFF1Q8IYR6 380 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PNPLA1Q8N8W4 532 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 DEPTORQ8TB45 409 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 PSMG2Q969U7 264 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 CAMK1GQ96NX5 476 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 P2RY13Q9BPV8 354 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 GTPBP2Q9BX10 602 aaKnown RBP15.79■□□□□ 0.12
VPS29-209ENST00000551655 NUSAP1Q9BXS6 441 aaKnown RBP15.79■□□□□ 0.12
VPS29-209ENST00000551655 TASP1Q9H6P5 420 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 IL21Q9HBE4 155 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 GJB4Q9NTQ9 266 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 TPCN1Q9ULQ1 816 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 MAFFQ9ULX9 164 aa15.79■□□□□ 0.12
VPS29-209ENST00000551655 ZNF638Q14966 1978 aaKnown RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 H0Y626 953 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 TRIM16O95361 564 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 GCFC2P16383 781 aaKnown RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 ATP2B1P20020 1258 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 DRD1P21728 446 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 PDIA3P30101 505 aaKnown RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 SSRP1Q08945 709 aaKnown RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 CENPPQ6IPU0 288 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 APPL2Q8NEU8 664 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 MDGA1Q8NFP4 955 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 OXER1Q8TDS5 423 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 JAKMIP1Q96N16 626 aaKnown RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 CDT1Q9H211 546 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 TUBGCP4Q9UGJ1 667 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 CIZ1Q9ULV3 898 aaPredicted RBP15.78■□□□□ 0.12
VPS29-209ENST00000551655 PCDHB8Q9UN66 801 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 CITO14578 2027 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 GON4LQ3T8J9 2241 aa15.78■□□□□ 0.12
VPS29-209ENST00000551655 MTMR11A4FU01 709 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 C1QL1O75973 258 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 HNRNPLP14866 589 aaKnown RBP eCLIP15.77■□□□□ 0.12
VPS29-209ENST00000551655 GJA4P35212 333 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 GRM5P41594 1212 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 YARSP54577 528 aaKnown RBP15.77■□□□□ 0.12
VPS29-209ENST00000551655 SEC13P55735 322 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 KRT32Q14532 448 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 TRIM22Q8IYM9 498 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 ACDQ96AP0 544 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 FNBP1Q96RU3 617 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 CCDC94Q9BW85 323 aaPredicted RBP15.77■□□□□ 0.12
VPS29-209ENST00000551655 SLC38A7Q9NVC3 462 aa15.77■□□□□ 0.12
VPS29-209ENST00000551655 ASXL3Q9C0F0 2248 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 DENND4CQ5VZ89 1909 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 CFAP46Q8IYW2 2715 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 OBSL1O75147 1896 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 DEXIO95424 95 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 CFIP05156 583 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 HMGB1P09429 215 aaKnown RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 MARCKSP29966 332 aaPredicted RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 NMT1P30419 496 aaKnown RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 YWHAHQ04917 246 aaPredicted RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 ZNF423Q2M1K9 1284 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 FBXO43Q4G163 708 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 RASSF3Q86WH2 238 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 CCDC33Q8N5R6 958 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 MCPH1Q8NEM0 835 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 USP13Q92995 863 aaPredicted RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 TOPORSQ9NS56 1045 aaPredicted RBP15.76■□□□□ 0.11
VPS29-209ENST00000551655 TBX20Q9UMR3 447 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 PCDH15Q96QU1 1955 aa15.76■□□□□ 0.11
VPS29-209ENST00000551655 UPK3BL1B0FP48 263 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 UPK3BL2E5RIL1 263 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 BAG4O95429 457 aaKnown RBP15.75■□□□□ 0.11
VPS29-209ENST00000551655 LARGE1O95461 756 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 HARSP12081 509 aaKnown RBP15.75■□□□□ 0.11
VPS29-209ENST00000551655 KCNE1P15382 129 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 ATF6P18850 670 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 WEE1P30291 646 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 RPL9P32969 192 aaKnown RBP15.75■□□□□ 0.11
VPS29-209ENST00000551655 RDXP35241 583 aaKnown RBP15.75■□□□□ 0.11
VPS29-209ENST00000551655 NAMPTP43490 491 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 C19orf57Q0VDD7 668 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 GPR17Q13304 367 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 ZNF568Q3ZCX4 644 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 SEZ6Q53EL9 994 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 C2orf27AQ580R0 203 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 C11orf74Q86VG3 221 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 SLFN12Q8IYM2 578 aa15.75■□□□□ 0.11
VPS29-209ENST00000551655 CMTM8Q8IZV2 173 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms