RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GFRA3O60609 400 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 LRRN2O75325 713 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 ITGB3P05106 788 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 ME1P48163 572 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 PRKCQQ04759 706 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 TMC8Q8IU68 726 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 THEM5Q8N1Q8 247 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 GPD1LQ8N335 351 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 C1orf127Q8N9H9 656 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 PJA1Q8NG27 643 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 SHKBP1Q8TBC3 707 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 CACTINQ8WUQ7 758 aaKnown RBP17.62■□□□□ 0.41
VPS29-207ENST00000549970 BORCS6Q96GS4 357 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 SEPT5Q99719 369 aaPredicted RBP17.62■□□□□ 0.41
VPS29-207ENST00000549970 ZCWPW1Q9H0M4 648 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 SLITRK6Q9H5Y7 841 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 PDE11AQ9HCR9 933 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 AGAP1Q9UPQ3 857 aa17.62■□□□□ 0.41
VPS29-207ENST00000549970 MIA3Q5JRA6 1907 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 A0A1W2PRU2 124 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 KANSL1LA0AUZ9 987 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 POLR2DO15514 142 aaKnown RBP17.61■□□□□ 0.41
VPS29-207ENST00000549970 PNPLA4P41247 253 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 NBL1P41271 181 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 UBXN2BQ14CS0 331 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 MGAT5BQ3V5L5 792 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 LMBRD2Q68DH5 695 aaPredicted RBP17.61■□□□□ 0.41
VPS29-207ENST00000549970 FRMD5Q7Z6J6 570 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 ZSCAN18Q8TBC5 510 aaPredicted RBP17.61■□□□□ 0.41
VPS29-207ENST00000549970 FAM200AQ8TCP9 573 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 SMARCD2Q92925 531 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 LRRC3Q9BY71 257 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 PCDHA7Q9UN72 937 aa17.61■□□□□ 0.41
VPS29-207ENST00000549970 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 KRT19P08727 400 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 TMEM191BP0C7N4 346 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 GLULP15104 373 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 CD72P21854 359 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 CASP1P29466 404 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 HOXD13P35453 343 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 VIPR2P41587 438 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 DNM1Q05193 864 aaKnown RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 BFSP1Q12934 665 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 FAM26FQ5R3K3 315 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 SCARA3Q6AZY7 606 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 TPRG1Q6ZUI0 275 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 DNAJB7Q7Z6W7 309 aaPredicted RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 CSGALNACT2Q8N6G5 542 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 PSMG2Q969U7 264 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 C7orf25Q9BPX7 421 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 LPIN3Q9BQK8 851 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 DDX23Q9BUQ8 820 aaKnown RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 TRMT61BQ9BVS5 477 aaKnown RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 MTMR12Q9C0I1 747 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 BLZF1Q9H2G9 400 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 BRD9Q9H8M2 597 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 ZNF334Q9HCZ1 680 aaPredicted RBP17.6■□□□□ 0.41
VPS29-207ENST00000549970 HEBP1Q9NRV9 189 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 FAM13BQ9NYF5 915 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 DLGAP2Q9P1A6 1054 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 HSFX1Q9UBD0 423 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 GTF3C3Q9Y5Q9 886 aa17.6■□□□□ 0.41
VPS29-207ENST00000549970 PROB1E7EW31 1015 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 KIAA0391O15091 583 aaKnown RBP17.59■□□□□ 0.41
VPS29-207ENST00000549970 EIF3DO15371 548 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS29-207ENST00000549970 TUFMP49411 452 aaKnown RBP17.59■□□□□ 0.41
VPS29-207ENST00000549970 STXBP5Q5T5C0 1151 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 CNNM4Q6P4Q7 775 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 VITQ6UXI7 678 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 ITIH5Q86UX2 942 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 LRRTM3Q86VH5 581 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 CBWD2Q8IUF1 395 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 ATXN3LQ9H3M9 355 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 MAGEF1Q9HAY2 307 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 ABI2Q9NYB9 513 aaPredicted RBP17.59■□□□□ 0.41
VPS29-207ENST00000549970 HSPBP1Q9NZL4 362 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 ITGA11Q9UKX5 1188 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 CFAP45Q9UL16 551 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 MTF2Q9Y483 593 aaPredicted RBP17.59■□□□□ 0.41
VPS29-207ENST00000549970 ASB3Q9Y575 518 aa17.59■□□□□ 0.41
VPS29-207ENST00000549970 ZFHX2Q9C0A1 2572 aaPredicted RBP17.59■□□□□ 0.41
VPS29-207ENST00000549970 NCANO14594 1321 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 FAM170BA6NMN3 283 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 HUS1O60921 280 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 PSMC3P17980 439 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 ATF6P18850 670 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 GABRR2P28476 465 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 GDI1P31150 447 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 AFMP43652 599 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 TSPY1Q01534 308 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 VEPH1Q14D04 833 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 RESP18Q5W5W9 173 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 ATL3Q6DD88 541 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 UNC13DQ70J99 1090 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 GAREM2Q75VX8 874 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 EPM2AIP1Q7L775 607 aaPredicted RBP17.58■□□□□ 0.4
VPS29-207ENST00000549970 ASCL5Q7RTU5 278 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 GPIHBP1Q8IV16 184 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 NELFCDQ8IXH7 590 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 DCP1BQ8IZD4 617 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms