RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PCDHGC3Q9UN70 934 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 EXOC7Q9UPT5 735 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ZKSCAN5Q9Y2L8 839 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 MTF2Q9Y483 593 aaPredicted RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 IRAK3Q9Y616 596 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 A0A1B0GTH6 734 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 KANSL1LA0AUZ9 987 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 FAM170BA6NMN3 283 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC30A4O14863 429 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 AP5Z1O43299 807 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CCP110O43303 1012 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 B4GALT3O60512 393 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CSDE1O75534 798 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CCNE2O96020 404 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SPATA31D3P0C874 917 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 ATP1A3P13637 1013 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 RARRES1P49788 294 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC26A2P50443 739 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 DNM2P50570 870 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 COPB1P53618 953 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 NLRP11P59045 1033 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 GPC5P78333 572 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 EHHADHQ08426 723 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 DMP1Q13316 513 aaPredicted RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 MLF2Q15773 248 aaPredicted RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 KNOP1Q1ED39 458 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CCDC40Q4G0X9 1142 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 ARSHQ5FYA8 562 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 ANKRD40Q6AI12 368 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SWSAP1Q6NVH7 229 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SPATA31D4Q6ZUB0 917 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SFR1Q86XK3 245 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 VSTM4Q8IW00 320 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SYCP3Q8IZU3 236 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 HVCN1Q96D96 273 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CEP170P1Q96L14 293 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 CNOT6LQ96LI5 555 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 NUP58Q9BVL2 599 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 RUSC1Q9BVN2 902 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 ZFAND3Q9H8U3 227 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 METTL14Q9HCE5 456 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 RTN4Q9NQC3 1192 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC2A4RGQ9NR83 387 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 MRPL17Q9NRX2 175 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 TBC1D13Q9NVG8 400 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 PRG3Q9Y2Y8 225 aaPredicted RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 MAST4O15021 2626 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 ITIH6Q6UXX5 1313 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 PHLPP2Q6ZVD8 1323 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 GCN1Q92616 2671 aaKnown RBP7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 COL1A2P08123 1366 aa7.7□□□□□ -1.18
DEPDC4-208ENST00000549341 NPHP3-ACAD11A0A0J9YXS1 232 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 A0A0U1RQF3 1178 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 A0A1W2PQC6 194 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 LRRC10BA6NIK2 292 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 MEIS3P2A8K0S8 358 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZBTB42B2RXF5 422 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PDXKO00764 312 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TEX28O15482 410 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 GAS2O43903 313 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 USO1O60763 962 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 HIP1RO75146 1068 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ATG7O95352 703 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ADH1AP07327 375 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 GALTP07902 379 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 EPB41P11171 864 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 LAMP2P13473 410 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PLS3P13797 630 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TGM1P22735 817 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 RFC5P40937 340 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF131P52739 623 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 STARD6P59095 220 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 UBXN1Q04323 297 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 RAD51AP2Q09MP3 1159 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 MYBPC2Q14324 1141 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ARID5BQ14865 1188 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 NR1I3Q14994 352 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PPP2R5AQ15172 486 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 KRT31Q15323 416 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 MAN2A1Q16706 1144 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 BMT2Q1RMZ1 405 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 NOMO2Q5JPE7 1267 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF484Q5JVG2 852 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 IL31Q6EBC2 164 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TWF2Q6IBS0 349 aaKnown RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ABHD15Q6UXT9 468 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 FAM43BQ6ZT52 329 aaPredicted RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 TPRG1Q6ZUI0 275 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 GLYCTKQ8IVS8 523 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZBTB44Q8NCP5 570 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF397Q8NF99 534 aaPredicted RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 CMASQ8NFW8 434 aaPredicted RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PRR7Q8TB68 274 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF507Q8TCN5 953 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 FGF14Q92915 247 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 NXPE3Q969Y0 559 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF707Q96C28 371 aaPredicted RBP7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 ITPKCQ96DU7 683 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 CCDC51Q96ER9 411 aa7.69□□□□□ -1.18
DEPDC4-208ENST00000549341 PCMTD1Q96MG8 357 aaPredicted RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms