RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	FAM163B	P0C2L3	166 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	UCHL3	P15374	230 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ZNF132	P52740	706 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	JAM2	P57087	298 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TPM4	P67936	248 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	GCNT1	Q02742	428 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	UBE3A	Q05086	875 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	GPM6B	Q13491	265 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ADGRE1	Q14246	886 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	USP41	Q3LFD5	358 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	DSTYK	Q6XUX3	929 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	SCARA5	Q6ZMJ2	495 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	DPH6	Q7L8W6	267 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	LRRTM3	Q86VH5	581 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	VSTM4	Q8IW00	320 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PIK3R5	Q8WYR1	880 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	NT5C1B	Q96P26	610 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TMEM209	Q96SK2	561 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	LPIN3	Q9BQK8	851 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TTPAL	Q9BTX7	342 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	C11orf84	Q9BUA3	381 aa	Predicted RBP	11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ELOVL4	Q9GZR5	314 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	RXFP1	Q9HBX9	757 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FBXL5	Q9UKA1	691 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	IRAK3	Q9Y616	596 aa		11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	COL4A4	P53420	1690 aa	Predicted RBP	11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.43	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TMEM265	A0A087WTH1	108 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	C2orf71	A6NGG8	1288 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PES1	O00541	588 aa	Known RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CILP	O75339	1184 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PNMA6A	P0CW24	399 aa	Predicted RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ZNF75D	P51815	510 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TERF1	P54274	439 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CETN1	Q12798	172 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ELAVL2	Q12926	359 aa	Known RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	WDR44	Q5JSH3	913 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FKBP15	Q5T1M5	1219 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	GPR65	Q8IYL9	337 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ADGRF2	Q8IZF7	708 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	MRPL43	Q8N983	215 aa	Known RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	RIN2	Q8WYP3	895 aa	Predicted RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	SHC3	Q92529	594 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	BAP1	Q92560	729 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CLSTN3	Q9BQT9	956 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ZSWIM1	Q9BR11	485 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	DPEP3	Q9H4B8	488 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CYP3A43	Q9HB55	503 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	UBE2T	Q9NPD8	197 aa	Predicted RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CISH	Q9NSE2	258 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FAM207A	Q9NSI2	230 aa	Predicted RBP	11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TMLHE	Q9NVH6	421 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	MTRR	Q9UBK8	725 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	STXBP5L	Q9Y2K9	1186 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ITIH6	Q6UXX5	1313 aa		11.42	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FOXN3	O00409	490 aa	Predicted RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TRAPPC3	O43617	180 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	HUS1	O60921	280 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ATP2C2	O75185	946 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CALCA	P01258	141 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CNP	P09543	421 aa	Known RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	OR4Q2	P0C623	313 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ODC1	P11926	461 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	RPL17	P18621	184 aa	Known RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ACAT1	P24752	427 aa	Known RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FXR1	P51114	621 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	RAD23B	P54727	409 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TNNC1	P63316	161 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	KRT17	Q04695	432 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TBX2	Q13207	712 aa	Predicted RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ORC1	Q13415	861 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FILIP1L	Q4L180	1135 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FIGN	Q5HY92	759 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	E4F1	Q66K89	784 aa	Predicted RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	OVOS1	Q6IE37	1185 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	SLC8B1	Q6J4K2	584 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	FAM171B	Q6P995	826 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CEP57	Q86XR8	500 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TMEM86A	Q8N2M4	240 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PPM1K	Q8N3J5	372 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	APPL2	Q8NEU8	664 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	OLIG1	Q8TAK6	271 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	SPATA18	Q8TC71	538 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	MRFAP1L1	Q96HT8	127 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	MMS19	Q96T76	1030 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	PRDM12	Q9H4Q4	367 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	GRPEL1	Q9HAV7	217 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	ACP6	Q9NPH0	428 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CRTAC1	Q9NQ79	661 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TLR9	Q9NR96	1032 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	DNAJC12	Q9UKB3	198 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	BACE2	Q9Y5Z0	518 aa		11.41	□□□□□ -0.58
NPIPB3-210	ENST00000542817	MYBPHL	A2RUH7	354 aa		11.4	□□□□□ -0.58
NPIPB3-210	ENST00000542817		F8VZ95	297 aa		11.4	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TEX28	O15482	410 aa		11.4	□□□□□ -0.58
NPIPB3-210	ENST00000542817	CXCL14	O95715	111 aa		11.4	□□□□□ -0.58
NPIPB3-210	ENST00000542817	GYPC	P04921	128 aa		11.4	□□□□□ -0.58
NPIPB3-210	ENST00000542817	TPM2	P07951	284 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms