RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ZNF197O14709 1029 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF263O14978 683 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 EIF3DO15371 548 aaKnown RBP eCLIP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 HRO43593 1189 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 TRAPPC3O43617 180 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 LRP3O75074 770 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 TOM1L1O75674 476 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 RHOBTB3O94955 611 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 GCNT3O95395 438 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 RPN1P04843 607 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 EDN1P05305 212 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 PRR29P0C7W0 189 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 MYL4P12829 197 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 TDGF1P13385 188 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 GJA1P17302 382 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 PSMC3P17980 439 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 PROZP22891 400 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 FCARP24071 287 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ROR1Q01973 937 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 CCDC6Q16204 474 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 KMT5BQ4FZB7 885 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 L1TD1Q5T7N2 865 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 CYP4A22Q5TCH4 519 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ATF7IP2Q5U623 682 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 VITQ6UXI7 678 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ANKS3Q6ZW76 656 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 EPM2AIP1Q7L775 607 aaPredicted RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 APBB1IPQ7Z5R6 666 aaPredicted RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 YAF2Q8IY57 180 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ELMOD1Q8N336 334 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 C12orf50Q8NA57 414 aaPredicted RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 DDX1Q92499 740 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 CCDC47Q96A33 483 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 DDX27Q96GQ7 796 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 GSDMAQ96QA5 445 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 IER2Q9BTL4 223 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 SLITRK6Q9H5Y7 841 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 GOLGA2P5Q9HBQ8 144 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 RBM12Q9NTZ6 932 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 EXOC1Q9NV70 894 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 TBC1D7Q9P0N9 293 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 EXOC7Q9UPT5 735 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 UBE4BO95155 1302 aa9.44□□□□□ -0.9
CLSTN3-212ENST00000541770 ZFHX4Q86UP3 3567 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 MYH11P35749 1972 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 WDR27A2RRH5 827 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 SLC38A8A6NNN8 435 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 NRG2O14511 850 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ABLIM1O14639 778 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 AXIN1O15169 862 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 SMC2O95347 1197 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 CHRNB1P11230 501 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 VIPR2P41587 438 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 CASP5P51878 434 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 KPNA1P52294 538 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 PNOCQ13519 176 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 LRRC32Q14392 662 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 NAB2Q15742 525 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 BMT2Q1RMZ1 405 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 DCAF4L1Q3SXM0 396 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ZC2HC1CQ53FD0 456 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 PRSS36Q5K4E3 855 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 N4BP2L1Q5TBK1 243 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 IQCEQ6IPM2 695 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 MPZL3Q6UWV2 235 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 RTL10Q7L3V2 364 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 LONP2Q86WA8 852 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 GPIHBP1Q8IV16 184 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 HS6ST3Q8IZP7 471 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 FAM160A2Q8N612 972 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF461Q8TAF7 563 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 TTC8Q8TAM2 541 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF507Q8TCN5 953 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 FAM200AQ8TCP9 573 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ZNF512Q96ME7 567 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ZSWIM3Q96MP5 696 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ASB16Q96NS5 453 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ACCSQ96QU6 501 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 TARS2Q9BW92 718 aaKnown RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 FGFBP2Q9BYJ0 223 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 GTPBP4Q9BZE4 634 aaKnown RBP9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ARRDC1-AS1Q9H2J1 176 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 TMEM206Q9H813 350 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 RMND1Q9NWS8 449 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 BACE2Q9Y5Z0 518 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 STYXL1Q9Y6J8 313 aa9.43□□□□□ -0.9
CLSTN3-212ENST00000541770 ARHGEF37A1IGU5 675 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 HEPACAM2A8MVW5 462 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 HNRNPDLO14979 420 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 CLDN3O15551 220 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 MCF2P10911 925 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 MCM4P33991 863 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 CNR2P34972 360 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 CCR2P41597 374 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SOX9P48436 509 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 LIG4P49917 911 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 OSTNP61366 133 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 SNRPFP62306 86 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 MCL1Q07820 350 aa9.42□□□□□ -0.9
CLSTN3-212ENST00000541770 TWF1Q12792 350 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms