RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 UNC93AQ86WB7 457 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 DCP1BQ8IZD4 617 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 LNX1Q8TBB1 728 aaPredicted RBP18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 C2orf15Q8WU43 125 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 TNIP3Q96KP6 325 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 UHRF1Q96T88 793 aaPredicted RBP18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 ACBD6Q9BR61 282 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 SNX25Q9H3E2 840 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 CACNG4Q9UBN1 327 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 PPEF2O14830 753 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 SPTLC1O15269 473 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 LILRB3O75022 631 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 SERPINC1P01008 464 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 WARSP23381 471 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 TKTP29401 623 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 GCNT1Q02742 428 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 CAMK1Q14012 370 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 CTXN3Q4LDR2 81 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 PLPP4Q5VZY2 271 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 SLC8B1Q6J4K2 584 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 FMNL3Q8IVF7 1028 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 ADGRF2Q8IZF7 708 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 VN1R3Q9BXE9 311 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 TLE6Q9H808 572 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 GCNT4Q9P109 453 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 HSFX1Q9UBD0 423 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 NXF1Q9UBU9 619 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 MTCH2Q9Y6C9 303 aa18.75■□□□□ 0.59
CLSTN3-210ENST00000540931 PLXNA4Q9HCM2 1894 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 EPOPA6NHQ4 379 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 F8W810 466 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 GABRDO14764 452 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 KLRC2P26717 231 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 COPB1P53618 953 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 NFE2Q16621 373 aaPredicted RBP18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 SOWAHAQ2M3V2 549 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 RTP2Q5QGT7 225 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 LUZP1Q86V48 1076 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 PDCL2Q8N4E4 241 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 IQCDQ96DY2 449 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 BCO2Q9BYV7 579 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 PLEKHA4Q9H4M7 779 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 CDH9Q9ULB4 789 aa18.74■□□□□ 0.59
CLSTN3-210ENST00000540931 SCN1AP35498 2009 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 LGALS16A8MUM7 142 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 CBFA2T2O43439 604 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 BMP1P13497 986 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 DNAJB1P25685 340 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 GNL1P36915 607 aaPredicted RBP18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 MFAP3P55082 362 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 RAB33AQ14088 237 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 UVSSAQ2YD98 709 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 MIIPQ5JXC2 388 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 WSCD1Q658N2 575 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 TAS1R1Q7RTX1 841 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 SPRED2Q7Z698 418 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 ZNF461Q8TAF7 563 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 L1RE1Q9UN81 338 aa18.73■□□□□ 0.59
CLSTN3-210ENST00000540931 I3L4J1 428 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 C2CD2LO14523 706 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 TBC1D4O60343 1298 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 GLUD1P00367 558 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 GPR17Q13304 367 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 DUSP6Q16828 381 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 HSP90AA4PQ58FG1 418 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 TRIM65Q6PJ69 517 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 CCDC149Q6ZUS6 474 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 OR6B3Q8NGW1 331 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 CASP10Q92851 521 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 KLHL5Q96PQ7 755 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 INTS2Q9H0H0 1204 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 VPS16Q9H269 839 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 PLCB1Q9NQ66 1216 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 DZANK1Q9NVP4 752 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 DDX43Q9NXZ2 648 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 TAB2Q9NYJ8 693 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 APEX2Q9UBZ4 518 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 FBXL5Q9UKA1 691 aa18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 BARX2Q9UMQ3 279 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-210ENST00000540931 RFXAPO00287 272 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 TEX28O15482 410 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 CNPP09543 421 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 CPB1P15086 417 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 ELF1P32519 619 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 UBXN1Q04323 297 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 INCA1Q0VD86 236 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 CUL2Q13617 745 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 CYP26C1Q6V0L0 522 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 TMEM184AQ6ZMB5 413 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 C4orf50Q6ZRC1 276 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 EFHBQ8N7U6 833 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 LMO3Q8TAP4 145 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 SEMA4DQ92854 862 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 NECAB3Q96P71 396 aaPredicted RBP18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 ERGIC2Q96RQ1 377 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 HSD3B7Q9H2F3 369 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 KIAA1257Q9ULG3 409 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 CDY1Q9Y6F8 540 aa18.71■□□□□ 0.59
CLSTN3-210ENST00000540931 COL4A4P53420 1690 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 A0A1W2PQC6 194 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms