RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 AIPL1Q9NZN9 384 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 BARX2Q9UMQ3 279 aaPredicted RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 NENFQ9UMX5 172 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 LZTS1Q9Y250 596 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PRG3Q9Y2Y8 225 aaPredicted RBP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS33A-204ENST00000540669 SNX9Q9Y5X1 595 aa11.29□□□□□ -0.6
VPS33A-204ENST00000540669 PLXNA3P51805 1871 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 PES1O00541 588 aaKnown RBP11.28□□□□□ -0.6
VPS33A-204ENST00000540669 LILRB3O75022 631 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ODC1P11926 461 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 P4HA1P13674 534 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 DNAJB2P25686 324 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 CASP14P31944 242 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 OR1G1P47890 313 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ERVK-21P61565 698 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 CDK17Q00537 523 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 LRMPQ12912 555 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ELAVL2Q12926 359 aaKnown RBP11.28□□□□□ -0.6
VPS33A-204ENST00000540669 DRAP1Q14919 205 aaPredicted RBP11.28□□□□□ -0.6
VPS33A-204ENST00000540669 RRAGAQ7L523 313 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 IRF2BP2Q7Z5L9 587 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 UNC93AQ86WB7 457 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ADGRF2Q8IZF7 708 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 CRYBG2Q8N1P7 616 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 FIBCD1Q8N539 461 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 EPS8L1Q8TE68 723 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 PIK3R5Q8WYR1 880 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 DDX1Q92499 740 aaKnown RBP11.28□□□□□ -0.6
VPS33A-204ENST00000540669 RABGGTAQ92696 567 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 TIFAQ96CG3 184 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 SAMD11Q96NU1 681 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ZSWIM1Q9BR11 485 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 COLEC11Q9BWP8 271 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ELOVL4Q9GZR5 314 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ZBP1Q9H171 429 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 ABHD10Q9NUJ1 306 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 STK39Q9UEW8 545 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 NOCTQ9UK39 431 aaKnown RBP11.28□□□□□ -0.6
VPS33A-204ENST00000540669 STXBP5LQ9Y2K9 1186 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 FAN1Q9Y2M0 1017 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 RWDD3Q9Y3V2 267 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 IRAK3Q9Y616 596 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 SZT2Q5T011 3432 aa11.28□□□□□ -0.6
VPS33A-204ENST00000540669 GREB1Q4ZG55 1949 aa11.27□□□□□ -0.6
VPS33A-204ENST00000540669 LRRC53A6NM62 1247 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 I3L4J1 428 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 FOXN3O00409 490 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CYB561D2O14569 222 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 SOD2P04179 222 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 ALDH2P05091 517 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CA3P07451 260 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 PNMA6AP0CW24 399 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 MYOGP15173 224 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 IBSPP21815 317 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 TKTP29401 623 aaKnown RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CLCN1P35523 988 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 SOX5P35711 763 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 BMPR1AP36894 532 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 PBX2P40425 430 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 RAP1GAPP47736 663 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 RABGGTBP53611 331 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 RAD23BP54727 409 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 MFAP3P55082 362 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CDH8P55286 799 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 TNNC1P63316 161 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 DSG1Q02413 1049 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CAMK1Q14012 370 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 RTP2Q5QGT7 225 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 KIAA0319Q5VV43 1072 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 WSCD1Q658N2 575 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 PPP2R2DQ66LE6 453 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 SCARA5Q6ZMJ2 495 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 DDX53Q86TM3 631 aaKnown RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CNGA4Q8IV77 575 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 SLC4A11Q8NBS3 891 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 CCDC150Q8NCX0 1101 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 OR10T2Q8NGX3 314 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 HASPINQ8TF76 798 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 FAM193BQ96PV7 902 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 PANX2Q96RD6 677 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 GAS2L1Q99501 681 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 NUCKS1Q9H1E3 243 aaKnown RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 UBE2TQ9NPD8 197 aaPredicted RBP11.27□□□□□ -0.61
VPS33A-204ENST00000540669 NLRC4Q9NPP4 1024 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 SPG21Q9NZD8 308 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 MTRRQ9UBK8 725 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 DSEQ9UL01 958 aa11.27□□□□□ -0.61
VPS33A-204ENST00000540669 ARHGEF37A1IGU5 675 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 NT5C1B-RDH14C9J2C7 533 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 FSCN2O14926 492 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 TRAPPC3O43617 180 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 FGF18O76093 207 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 RB1P06400 928 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 PAEPP09466 180 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 WEE2P0C1S8 567 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 KRT9P35527 623 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 ALDH7A1P49419 539 aaKnown RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 YWHAEP62258 255 aaKnown RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 PLCB2Q00722 1185 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms