RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SCN7AQ01118 1682 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 DNALI1O14645 258 aaPredicted RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 RHBDL3P58872 404 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 MED21Q13503 144 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 TFDP1Q14186 410 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 BBS9Q3SYG4 887 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 Q4G0T1 1027 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 OLFML2BQ68BL8 750 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 MARK2Q7KZI7 788 aaKnown RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 SMYD3Q9H7B4 428 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 RAB20Q9NX57 234 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 HSPBP1Q9NZL4 362 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 DNPEPQ9ULA0 475 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 SPECC1L-ADORA2AF8WAN1 911 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 SLITRK3O94933 977 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 BGNP21810 368 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 HIF1AQ16665 826 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 CTC1Q2NKJ3 1217 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 LIN9Q5TKA1 542 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 RIPOR1Q6ZS17 1223 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 GLIS1Q8NBF1 620 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 ABTB1Q969K4 478 aaPredicted RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 DDX27Q96GQ7 796 aaKnown RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 OXNAD1Q96HP4 312 aaPredicted RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 SH2D3AQ9BRG2 576 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 PREBQ9HCU5 417 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 MARCOQ9UEW3 520 aaPredicted RBP13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC24A2Q9UI40 661 aa13.52□□□□□ -0.25
SFSWAP-209ENST00000540469 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TTC36A6NLP5 189 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 GCAP28676 217 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 CDK7P50613 346 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SH3BGRP55822 239 aaPredicted RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TCEAL1Q15170 157 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 LCA5Q86VQ0 697 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SPATA24Q86W54 205 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ACCSQ96QU6 501 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 PAFAH2Q99487 392 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 NMUR2Q9GZQ4 415 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 MIS12Q9H081 205 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ZWILCHQ9H900 591 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 VAV3Q9UKW4 847 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 UBE4BO95155 1302 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 FAM237BA0A1B0GVD1 139 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TYROBPO43914 113 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 KRT1P04264 644 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SETSIPP0DME0 302 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TPP2P29144 1249 aaPredicted RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ARL4CP56559 192 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SPDYAQ5MJ70 313 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SH2D4BQ5SQS7 431 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 SYDE2Q5VT97 1194 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 C3orf62Q6ZUJ4 267 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ALYREFQ86V81 257 aaKnown RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 RHPN2Q8IUC4 686 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 PPP2R3CQ969Q6 453 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 PTCD3Q96EY7 689 aaKnown RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TMEM206Q9H813 350 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 EURLQ9NYK6 297 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 CLIC5Q9NZA1 410 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 COMMD3-BMI1R4GMX3 469 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ITGB4P16144 1822 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 NHSL1Q5SYE7 1610 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 FAM200BP0CF97 657 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 PSMC4P43686 418 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 NFIL3Q16649 462 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 MYLK4Q86YV6 388 aaPredicted RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 OGFOD1Q8N543 542 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 ZSWIM2Q8NEG5 633 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 LENG9Q96B70 501 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 P2RX7Q99572 595 aaKnown RBP13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 TUFT1Q9NNX1 390 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 KCNQ5Q9NR82 932 aa13.51□□□□□ -0.25
SFSWAP-209ENST00000540469 CCDC195A0A1B0GUA6 201 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 A6NJR5 290 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 HNRNPRO43390 633 aaKnown RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 ALDH18A1P54886 795 aaKnown RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 DYNLT1P63172 113 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 GTF2IP78347 998 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 TDRPQ86YL5 185 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 ATP11CQ8NB49 1132 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MPP4Q96JB8 637 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 FAM81BQ96LP2 452 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MMADHCQ9H3L0 296 aaPredicted RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MYH11P35749 1972 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 P4HA2O15460 535 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SERPINB6P35237 376 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SREBF1P36956 1147 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 EPHB1P54762 984 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 USP46P62068 366 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 CDC16Q13042 620 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC15A2Q16348 729 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 CLEC16AQ2KHT3 1053 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 TRMT5Q32P41 509 aaKnown RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 ISLR2Q6UXK2 745 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SDCCAG8Q86SQ7 713 aaPredicted RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 TMPRSS6Q8IU80 811 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC26A7Q8TE54 656 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SHC3Q92529 594 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms