RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 GLI1P08151 1106 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FAM228BP0C875 321 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 HSMCR30P0CW71 290 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 CDK7P50613 346 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FOLH1Q04609 750 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SLC9A4Q6AI14 798 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 C3orf62Q6ZUJ4 267 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 UNC13DQ70J99 1090 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 APPL2Q8NEU8 664 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ZFAND2BQ8WV99 257 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 NLRP3Q96P20 1036 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 IMPAD1Q9NX62 359 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 NUP160Q12769 1436 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FOXO3O43524 673 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ADAMTS2O95450 1211 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 RARGP13631 454 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SOX5P35711 763 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 EIF6P56537 245 aaKnown RBP9.13□□□□□ -0.95
YBX3-208ENST00000540447 ZSWIM7Q19AV6 140 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 C5orf22Q49AR2 442 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ATP13A5Q4VNC0 1218 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ITPRIPL1Q6GPH6 555 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 HMBOX1Q6NT76 420 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FAM45AQ8TCE6 357 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 HTRA1Q92743 480 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 KIAA1683Q9H0B3 1180 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PFDN2Q9UHV9 154 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SYNPO2Q9UMS6 1093 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 HECW1Q76N89 1606 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 MYO3BQ8WXR4 1341 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PSMD11O00231 422 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PEX14O75381 377 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 TOP3BO95985 862 aaKnown RBP9.13□□□□□ -0.95
YBX3-208ENST00000540447 SLC9A3P48764 834 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 USP11P51784 963 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 RHAGQ02094 409 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 NSUN2Q08J23 767 aaKnown RBP eCLIP9.13□□□□□ -0.95
YBX3-208ENST00000540447 TSTA3Q13630 321 aaPredicted RBP9.13□□□□□ -0.95
YBX3-208ENST00000540447 GLYCTKQ8IVS8 523 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SLC35G2Q8TBE7 412 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PCIF1Q9H4Z3 704 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ADAM22Q9P0K1 906 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PCDHGC5Q9Y5F6 944 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 CLRN2A0PK11 232 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 MEI4A8MW99 385 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 IL6P05231 212 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 LYNP07948 512 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 IFNAR1P17181 557 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FASP25445 335 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 GNL1P36915 607 aaPredicted RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 TPTEP56180 551 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TBCELQ5QJ74 424 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DHDDSQ86SQ9 333 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 WRNIP1Q96S55 665 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 USP44Q9H0E7 712 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 COPS7BQ9H9Q2 264 aaPredicted RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 VTA1Q9NP79 307 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TMEM161AQ9NX61 479 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TKTP29401 623 aaKnown RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 IL5RAQ01344 420 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ROR1Q01973 937 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 RNF43Q68DV7 783 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 SULT1C3Q6IMI6 304 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DENND5AQ6IQ26 1287 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TSEN2Q8NCE0 465 aaKnown RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 PHC3Q8NDX5 983 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 RASGRP4Q8TDF6 673 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 PROX1Q92786 737 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 UBA2Q9UBT2 640 aaPredicted RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 PNMA3Q9UL41 463 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ZFYVE9O95405 1425 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 CLDN3O15551 220 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 IFNA16P05015 189 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ITGAXP20702 1163 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 CCNFP41002 786 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ERVK-24P63145 666 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 BNIP1Q12981 228 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 KRT74Q7RTS7 529 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 BBS7Q8IWZ6 715 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DEPTORQ8TB45 409 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ANKS1AQ92625 1134 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 OXNAD1Q96HP4 312 aaPredicted RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 INTS13Q9NVM9 706 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 TUBE1Q9UJT0 475 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 SYCP2Q9BX26 1530 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 UPP2O95045 317 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FKBP9O95302 570 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 LDHBP07195 334 aaKnown RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 UQCRBP14927 111 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DRD4P21917 467 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 PURAQ00577 322 aaKnown RBP9.12□□□□□ -0.95
YBX3-208ENST00000540447 EDRF1Q3B7T1 1238 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 C4orf50Q6ZRC1 276 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FKBP9P1Q75LS8 142 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 IFNL2Q8IZJ0 200 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 DHRSXQ8N5I4 330 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 MINDY2Q8NBR6 621 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 ATXN7L3BQ96GX2 97 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 YME1L1Q96TA2 773 aa9.12□□□□□ -0.95
YBX3-208ENST00000540447 FUCA2Q9BTY2 467 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms