RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LRRC19Q9H756 370 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 A0A087WUV0 522 aaPredicted RBP17.89■□□□□ 0.45
USP28-208ENST00000540438 GDF10P55107 478 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 PTP4A2Q12974 167 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 XRRA1Q6P2D8 792 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 C4orf33Q8N1A6 199 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 PPM1EQ8WY54 764 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 HVCN1Q96D96 273 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 SNF8Q96H20 258 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 C12orf42Q96LP6 360 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 SDCBP2Q9H190 292 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 NINJ2Q9NZG7 142 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 NR2E3Q9Y5X4 410 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 RLFQ13129 1914 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 HTTP42858 3142 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 ADGRA2Q96PE1 1338 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 TOM1L1O75674 476 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 RARGP13631 454 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 IL1R2P27930 398 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 MMRN1Q13201 1228 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 PTPN20Q4JDL3 420 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 AGBL2Q5U5Z8 902 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 CCDC13Q8IYE1 715 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 RBM15Q96T37 977 aaKnown RBP eCLIP17.89■□□□□ 0.45
USP28-208ENST00000540438 MRPL4Q9BYD3 311 aaKnown RBP17.89■□□□□ 0.45
USP28-208ENST00000540438 GPATCH2LQ9NWQ4 482 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 AGTPBP1Q9UPW5 1226 aa17.89■□□□□ 0.45
USP28-208ENST00000540438 TCP11X1B4DZS4 312 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 GOLGA8RI6L899 631 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 SOCS7O14512 581 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 GAS8O95995 478 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 OAZ1P54368 228 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 TARBP2Q15633 366 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 DUOXA2Q1HG44 320 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 ATF7IP2Q5U623 682 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 SLFN12LQ6IEE8 588 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 NPNTQ6UXI9 565 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 CCDC121Q6ZUS5 278 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 CPXM1Q96SM3 734 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 CALN1Q9BXU9 219 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 VPS37BQ9H9H4 285 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 MAFO75444 373 aaPredicted RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 ASS1P00966 412 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 DRD4P21917 467 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 SNRPFP62306 86 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 ATP11AP98196 1134 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 KCTD2Q14681 263 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 EFTUD2Q15029 972 aaKnown RBP eCLIP17.88■□□□□ 0.452e-6■■■■■ 27.7
USP28-208ENST00000540438 METTL7BQ6UX53 244 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 ZC3H18Q86VM9 953 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 CACNA2D3Q8IZS8 1091 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 ATL2Q8NHH9 583 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 CHMP6Q96FZ7 201 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 FGD4Q96M96 766 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 FAM49AQ9H0Q0 323 aaPredicted RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 ALG13Q9NP73 1137 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 HAUS2Q9NVX0 235 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 WDR91A4D1P6 747 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 ATG7O95352 703 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 POTEJP0CG39 1038 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 PSMA2P25787 234 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 FAM160B1Q5W0V3 765 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 PLVAPQ9BX97 442 aa17.88■□□□□ 0.45
USP28-208ENST00000540438 METTL5Q9NRN9 209 aaKnown RBP17.88■□□□□ 0.45
USP28-208ENST00000540438 PSMC1P62191 440 aaKnown RBP17.87■□□□□ 0.45
USP28-208ENST00000540438 BRSK2Q8IWQ3 736 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 CHST13Q8NET6 341 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 LENG1Q96BZ8 264 aaPredicted RBP17.87■□□□□ 0.45
USP28-208ENST00000540438 PARVAQ9NVD7 372 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.87■□□□□ 0.45
USP28-208ENST00000540438 LACTBL1A8MY62 500 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 CNMDO75829 334 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 HOXC6P09630 235 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 INSRRP14616 1297 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 BRAFP15056 766 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 MMP8P22894 467 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 FNTAP49354 379 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 BPIFB4P59827 614 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 NEDD9Q14511 834 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 CYP1B1Q16678 543 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 C15orf59Q2T9L4 293 aaPredicted RBP17.87■□□□□ 0.45
USP28-208ENST00000540438 FAXCQ5TGI0 409 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 NUGGCQ68CJ6 796 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 JADE1Q6IE81 842 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 ZBED8Q8IZ13 594 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 OPTNQ96CV9 577 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 MMP19Q99542 508 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 FAM49BQ9NUQ9 324 aa17.87■□□□□ 0.45
USP28-208ENST00000540438 FAM189A1O60320 539 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 NUDT17P0C025 328 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 PECAM1P16284 738 aaPredicted RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 HSPA6P17066 643 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ACTN3Q08043 901 aaPredicted RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 ERMARDQ5T6L9 678 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 GKAP1Q5VSY0 366 aaPredicted RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 SCYL2Q6P3W7 929 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ENOSF1Q7L5Y1 443 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ZBTB8OSQ8IWT0 167 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ATXN2LQ8WWM7 1075 aaKnown RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms