RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 LRRTM3Q86VH5 581 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 CREBRFQ8IUR6 639 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 GPR65Q8IYL9 337 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 TOP6BLQ8N6T0 577 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 WHAMMQ8TF30 809 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 TWNKQ96RR1 684 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 CRACR2AQ9BSW2 395 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 TRIM5Q9C035 493 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 VPS16Q9H269 839 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 NDST4Q9H3R1 872 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 NGRNQ9NPE2 291 aaKnown RBP13.94□□□□□ -0.18
CCDC42-202ENST00000539522 ENTPD7Q9NQZ7 604 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 TMLHEQ9NVH6 421 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 PUF60Q9UHX1 559 aaKnown RBP13.94□□□□□ -0.18
CCDC42-202ENST00000539522 FBXL5Q9UKA1 691 aa13.94□□□□□ -0.18
CCDC42-202ENST00000539522 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 P4HA2O15460 535 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 TRAPPC3O43617 180 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 STX10O60499 249 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 CDR1P51861 262 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 ELAVL2Q12926 359 aaKnown RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 TRPC3Q13507 836 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 PSMD5Q16401 504 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 SLC8B1Q6J4K2 584 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 GJB7Q6PEY0 223 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 SCARA5Q6ZMJ2 495 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 USP37Q86T82 979 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 RBM23Q86U06 439 aaKnown RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 FAM114A1Q8IWE2 563 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 EHBP1Q8NDI1 1231 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 KREMEN1Q96MU8 473 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 NAP1L5Q96NT1 182 aaPredicted RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 PPP1R9BQ96SB3 815 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 CRISPLD1Q9H336 500 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 MRPL17Q9NRX2 175 aaKnown RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 FNIP2Q9P278 1114 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 NXF1Q9UBU9 619 aaKnown RBP13.93□□□□□ -0.18
CCDC42-202ENST00000539522 BACE2Q9Y5Z0 518 aa13.93□□□□□ -0.18
CCDC42-202ENST00000539522 UNC80Q8N2C7 3258 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 WDR27A2RRH5 827 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 EPHB6O15197 1021 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 TEX33O43247 280 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 ATP2C2O75185 946 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 TACC1O75410 805 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 URODP06132 367 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 WEE2P0C1S8 567 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 ODC1P11926 461 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 ACO1P21399 889 aaKnown RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 IGFBP4P22692 258 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 WARSP23381 471 aaKnown RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 PAX3P23760 479 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 ACAT1P24752 427 aaKnown RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 PON1P27169 355 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 LTBRP36941 435 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 NRIP1P48552 1158 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 CLCN4P51793 760 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 FANCCQ00597 558 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 DLX2Q07687 328 aaPredicted RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 LRMPQ12912 555 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 MYO1EQ12965 1108 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 CTC1Q2NKJ3 1217 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 OVOS1Q6IE37 1185 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 GLYCTKQ8IVS8 523 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 ADGRF2Q8IZF7 708 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 TAF4BQ92750 862 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 INTS2Q9H0H0 1204 aaKnown RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 DPEP3Q9H4B8 488 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 NSUN3Q9H649 340 aaKnown RBP13.92□□□□□ -0.18
CCDC42-202ENST00000539522 SIK3Q9Y2K2 1263 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 CDY1Q9Y6F8 540 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 C2orf16Q68DN1 1984 aa13.92□□□□□ -0.18
CCDC42-202ENST00000539522 GTPBP10A4D1E9 387 aaKnown RBP13.91□□□□□ -0.18
CCDC42-202ENST00000539522 LGALS16A8MUM7 142 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 CBFA2T2O43439 604 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 NOL4O94818 638 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ABLIM3O94929 683 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 SERPINC1P01008 464 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 PRKCSHP14314 528 aaPredicted RBP13.91□□□□□ -0.18
CCDC42-202ENST00000539522 FOSL2P15408 326 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 EPCAMP16422 314 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 OR1D2P34982 312 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ZNF75DP51815 510 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ROR1Q01973 937 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 YWHAHQ04917 246 aaPredicted RBP13.91□□□□□ -0.18
CCDC42-202ENST00000539522 INCA1Q0VD86 236 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ORC1Q13415 861 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 RAB33AQ14088 237 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 PTPROQ16827 1216 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ZNF667Q5HYK9 610 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 PDE12Q6L8Q7 609 aaKnown RBP13.91□□□□□ -0.18
CCDC42-202ENST00000539522 TRIM65Q6PJ69 517 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ANKS3Q6ZW76 656 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 DPH6Q7L8W6 267 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ANKRD20A12PQ8NF67 263 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 MICAL1Q8TDZ2 1067 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 MRFAP1L1Q96HT8 127 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 PDLIM2Q96JY6 352 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 GPR88Q9GZN0 384 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 NIF3L1Q9GZT8 377 aa13.91□□□□□ -0.18
CCDC42-202ENST00000539522 ZCWPW1Q9H0M4 648 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms