RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CELSR3Q9NYQ7 3312 aa13.6□□□□□ -0.23
CLSTN3-208ENST00000538933 ASCC3Q8N3C0 2202 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 INO80B-WBP1J3KQ70 363 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 USO1O60763 962 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 TBCAO75347 108 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 LETM1O95202 739 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 MYL1P05976 194 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 IDEP14735 1019 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 SOX9P48436 509 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 RARRES1P49788 294 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 NOVA1P51513 510 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 FOXC1Q12948 553 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 PNOCQ13519 176 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 CCINQ13939 588 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 LRRC32Q14392 662 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 MXD4Q14582 209 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 DGKKQ5KSL6 1271 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 TCEAL6Q6IPX3 200 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 PADI6Q6TGC4 694 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 DYMQ7RTS9 669 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 GRAMD1CQ8IYS0 662 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 SYT2Q8N9I0 419 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 ZNF461Q8TAF7 563 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 DEPDC1BQ8WUY9 529 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 TCEAL3Q969E4 200 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 SMARCE1Q969G3 411 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 CORO1BQ9BR76 489 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 ANP32EQ9BTT0 268 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 NFKBIZQ9BYH8 718 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 BLZF1Q9H2G9 400 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 KBTBD4Q9NVX7 518 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 TMEM63CQ9P1W3 806 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 PCDHGA5Q9Y5G8 931 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 TENM4Q6N022 2769 aa13.59□□□□□ -0.23
CLSTN3-208ENST00000538933 CCDC163A0A0D9SF12 145 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ZNF197O14709 1029 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ZNF263O14978 683 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 SEC24AO95486 1093 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ARL2P36404 184 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 SLC12A3P55017 1021 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 CAPSQ13938 189 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 RNF43Q68DV7 783 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 SLC8B1Q6J4K2 584 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ELOA2Q8IYF1 753 aaPredicted RBP13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 TCEAL8Q8IYN2 117 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 HS6ST3Q8IZP7 471 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ASAP3Q8TDY4 903 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 LRRC15Q8TF66 581 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 DDX27Q96GQ7 796 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 MSANTD3Q96H12 275 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 SCNM1Q9BWG6 230 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 GZF1Q9H116 711 aaPredicted RBP13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 VPS45Q9NRW7 570 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 KCND2Q9NZV8 630 aa13.58□□□□□ -0.24
CLSTN3-208ENST00000538933 ABCA7Q8IZY2 2146 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 MYBPHLA2RUH7 354 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 SLC38A8A6NNN8 435 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 HEPACAM2A8MVW5 462 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 TMEM189-UBE2V1I3L0A0 370 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 EXTL3O43909 919 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 RPP40O75818 363 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 DGAT1O75907 488 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 FAM13AO94988 1023 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 THP07101 528 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 PRR29P0C7W0 189 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 CYP11B2P19099 503 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 TKTP29401 623 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 MPLP40238 635 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 PXNP49023 591 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 EPHA5P54756 1037 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 ROR1Q01973 937 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 RAD51AP2Q09MP3 1159 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 ZNF252P-AS1Q0IIN9 211 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 FCHO2Q0JRZ9 810 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 CUL4BQ13620 913 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 RINT1Q6NUQ1 792 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 PKN3Q6P5Z2 889 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 C1orf228Q6PIY5 440 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 SASS6Q6UVJ0 657 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 MAEAQ7L5Y9 396 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 CCDC65Q8IXS2 484 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 DDX12PQ92771 950 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 LRRC3BQ96PB8 259 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 MTRQ99707 1265 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 C7orf25Q9BPX7 421 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 TRIM9Q9C026 710 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 C8orf33Q9H7E9 229 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 EXOC1Q9NV70 894 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 RMND1Q9NWS8 449 aa13.57□□□□□ -0.24
CLSTN3-208ENST00000538933 CACNA1EQ15878 2313 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 MYMKA6NI61 221 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 TTLL13PA6NNM8 815 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 C4orf47A7E2U8 309 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 SPECC1L-ADORA2AF8WAN1 911 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CHADO15335 359 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 LRG1P02750 347 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CAPNS1P04632 268 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 ATF2P15336 505 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 GLRA2P23416 452 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CASP1P29466 404 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms