RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DLG4P78352 724 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ADAM15Q13444 863 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 SLC18A3Q16572 532 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 LEXMQ3ZCV2 418 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ZBTB33Q86T24 672 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 TXLNBQ8N3L3 684 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ACO2Q99798 780 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ADPGKQ9BRR6 497 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 INTS2Q9H0H0 1204 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 CLEC1BQ9P126 229 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 FAN1Q9Y2M0 1017 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 BZW2Q9Y6E2 419 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 A0A087X0T9 212 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ANKRD63C9JTQ0 380 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ENC1O14682 589 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 PTGESO14684 152 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 INPPL1O15357 1258 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 FAM228BP0C875 321 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 HARSP12081 509 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 NDUFV1P49821 464 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 PTK2Q05397 1052 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 DSC1Q08554 894 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 PTCRAQ6ISU1 281 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 LLGL2Q6P1M3 1020 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 TAS1R1Q7RTX1 841 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 HACE1Q8IYU2 909 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 MRPL43Q8N983 215 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 PPP2R3CQ969Q6 453 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 TMEM134Q9H6X4 195 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 LUC7LQ9NQ29 371 aaKnown RBP12.81□□□□□ -0.36
CLIP1-208ENST00000537004 MARCH5Q9NX47 278 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ADAMTS1Q9UHI8 967 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 GOLGA8IPA6NC78 632 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 C2orf71A6NGG8 1288 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 GOLGA8JA6NMD2 632 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 CXCL14O95715 111 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 ATP1A1P05023 1023 aaKnown RBP12.8□□□□□ -0.36
CLIP1-208ENST00000537004 IGFBP6P24592 240 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-208ENST00000537004 PRKCIP41743 596 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 DUSP6Q16828 381 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 WHAMMP3Q1A5X7 153 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 SEZ6Q53EL9 994 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 GLRA4Q5JXX5 417 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 RSRC2Q7L4I2 434 aaKnown RBP12.8□□□□□ -0.36
CLIP1-208ENST00000537004 TRAPPC11Q7Z392 1133 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 EFHBQ8N7U6 833 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 CEP112Q8N8E3 955 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 RSPH1Q8WYR4 309 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 MRPL4Q9BYD3 311 aaKnown RBP12.8□□□□□ -0.36
CLIP1-208ENST00000537004 CDT1Q9H211 546 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 PTPRHQ9HD43 1115 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 NGRNQ9NPE2 291 aaKnown RBP12.8□□□□□ -0.36
CLIP1-208ENST00000537004 TNFSF13BQ9Y275 285 aa12.8□□□□□ -0.36
CLIP1-208ENST00000537004 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ANO9A1A5B4 782 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 CASTOR2A6NHX0 329 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 H0YCG3 227 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ABLIM1O14639 778 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 N4BP1O75113 896 aaKnown RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 TACC1O75410 805 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ADRB2P07550 413 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 PPP3CAQ08209 521 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 DMTNQ08495 405 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 SNRNP35Q16560 246 aaKnown RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ZNF568Q3ZCX4 644 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 C1orf220Q5T0J3 134 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 PAPD7Q5XG87 772 aaKnown RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 SLC39A4Q6P5W5 647 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ZNF571Q7Z3V5 609 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 DDX53Q86TM3 631 aaKnown RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 TRIM58Q8NG06 486 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 LMO3Q8TAP4 145 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 PLEKHO2Q8TD55 490 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 HASPINQ8TF76 798 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 SAAL1Q96ER3 474 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 B3GALT6Q96L58 329 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 RPS6KC1Q96S38 1066 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 TCHPQ9BT92 498 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 APOL5Q9BWW9 433 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 STK33Q9BYT3 514 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ZBP1Q9H171 429 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 CD320Q9NPF0 282 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 APEX2Q9UBZ4 518 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 DNAJC12Q9UKB3 198 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 CAPN6Q9Y6Q1 641 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 GRXCR2A6NFK2 248 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 F8VZ95 297 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 C2CD2LO14523 706 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 HNRNPDLO14979 420 aaKnown RBP12.79□□□□□ -0.36
CLIP1-208ENST00000537004 P4HA2O15460 535 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 NCK2O43639 380 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 MOCS3O95396 460 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 ABCD1P33897 745 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 STAT1P42224 750 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 GCLMP48507 274 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 CETN1Q12798 172 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 TEX35Q5T0J7 233 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 FBXO38Q6PIJ6 1188 aa12.79□□□□□ -0.36
CLIP1-208ENST00000537004 CBWD2Q8IUF1 395 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms