RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 MTSS1O43312 755 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 MZF1P28698 734 aaPredicted RBP18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 NEK2P51955 445 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 PTK7Q13308 1070 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 MTF1Q14872 753 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 HIST2H2ACQ16777 129 aaPredicted RBP18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 HIST2H2AA3Q6FI13 130 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 PCYOX1LQ8NBM8 494 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 FAM162AQ96A26 154 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 AGBL1Q96MI9 1066 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 AKAP10O43572 662 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 CAMTA2O94983 1202 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 RASA1P20936 1047 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 CDH16O75309 829 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 SPAG6O75602 509 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 RHOBTB1O94844 696 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 EPB42P16452 691 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 TCF7P36402 384 aaPredicted RBP18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 PLA2G4AP47712 749 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 LONRF1Q17RB8 773 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 IGDCC4Q8TDY8 1250 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 ATG4CQ96DT6 458 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 ANKEF1Q9NU02 776 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 ARL2BPQ9Y2Y0 163 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 APOA1P02647 267 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 CLEC4FQ8N1N0 589 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 SYTL2Q9HCH5 934 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 DTNAQ9Y4J8 743 aa18.97■□□□□ 0.63
SFSWAP-203ENST00000535236 SERPINB10P48595 397 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NLRP11P59045 1033 aaKnown RBP18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NAB2Q15742 525 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NAPEPLDQ6IQ20 393 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 ZNF677Q86XU0 584 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 C9orf72Q96LT7 481 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 OSBPL8Q9BZF1 889 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 BRD8Q9H0E9 1235 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 PPCSQ9HAB8 311 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 RIC8BQ9NVN3 520 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 ALDH1A2O94788 518 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 SGO1Q5FBB7 561 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 KHDRBS2Q5VWX1 349 aaKnown RBP18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 C16orf89Q6UX73 402 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 ZCWPW1Q9H0M4 648 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NPHS2Q9NP85 383 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 LRRIQ3A6PVS8 624 aaPredicted RBP18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 ZNF185O15231 689 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 THPOP40225 353 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NCALDP61601 193 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 PLEKHM3Q6ZWE6 761 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 TMEM169Q96HH4 297 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 HES6Q96HZ4 224 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 C17orf80Q9BSJ5 609 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 OSBPL1AQ9BXW6 950 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 JMJD4Q9H9V9 463 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 KCNH7Q9NS40 1196 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 PLA2R1Q13018 1463 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 A0A1B0GTH6 734 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 NPM3O75607 178 aaKnown RBP18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 CYTH1Q15438 398 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 CENPPQ6IPU0 288 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 C11orf96Q7Z7L8 435 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 C4orf33Q8N1A6 199 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 LINC00116Q8NCU8 138 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 VPS37AQ8NEZ2 397 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 FAM167BQ9BTA0 163 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 EPC1Q9H2F5 836 aa18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 UBQLN1Q9UMX0 589 aaKnown RBP18.96■□□□□ 0.63
SFSWAP-203ENST00000535236 TBC1D4O60343 1298 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 RGS2P41220 211 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SLC11A2P49281 568 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 TERF2Q15554 542 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 IFNEQ86WN2 208 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 CACNA2D2Q9NY47 1150 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 MARCOQ9UEW3 520 aaPredicted RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 E2F8A0AVK6 867 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SMAPO00193 183 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 TP53BP2Q13625 1128 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 C4orf22Q6V702 233 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 EFL1Q7Z2Z2 1120 aaKnown RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 PARP9Q8IXQ6 854 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 PRPF18Q99633 342 aaKnown RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 H7C4K7 107 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 ITGB3P05106 788 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 GSNP06396 782 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SLC2A3P11169 496 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SKOR1P84550 965 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 GUCY1A3Q02108 690 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 ZNF177Q13360 481 aaPredicted RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 DNAL1Q4LDG9 190 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 ZNF513Q8N8E2 541 aaPredicted RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 RDM1Q8NG50 284 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 GPRASP2Q96D09 838 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 SCAF8Q9UPN6 1271 aaKnown RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 P4HA2O15460 535 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 HNRNPRO43390 633 aaKnown RBP18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 CST8O60676 142 aa18.95■□□□□ 0.62
SFSWAP-203ENST00000535236 GUCA1CO95843 209 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms